miRkwood small RNA-seq is a comprehensive toolbox for the analysis of small RNA deep sequencing data in plants. It takes as input a set of short expressed reads (from 15 to 35 nt) that have been previously mapped on a reference genome, and searches for all microRNAs present in the data. Furthermore, it provides additional features that help the user to make the most out of the data: thermodynamic stability, quality of the miRNA-miRNA* duplex, read coverage, read visualisation, miRNA conservation,...
Web server
Documentation
Local install
- see GitHub