What is FiLT3r ?
FiLT3r is a software that detects internal duplications in raw sequencing data.
It can be run on the command line or directly within this webpage (see below).
FiLT3r, a frugal alignment-free approach for duplication identification in known genes
FiLT3r detects tandem duplications in known genes that are given as an input to the software. FiLT3r uses an alignment-free approach, which is resource-frugal. Compared to the state-of-the-art, FiLT3r is faster and uses less memory, while having better results both for detecting the duplications and for quantifying them. FiLT3r was tested on capture data and RNA-Seq data for FLT3-ITD quantification. Detailed results can be found in Baudry et al, 2022.
Source code, installation, usage
All the informations are available on the Git repository of the software.
Running FiLT3r on your data
We offer you the possibility to launch FiLT3r on your own data from that webpage. All your sequence data remains private. Your sequence data doesn't leave your computer.