>U39362.2/2084-2135 Human immunodeficiency virus type 1 proviral DNA, gag, pol, vif, vpr, vpu, env, tat, rev and nef genes, complete cds.
TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTT
>X04415.1/1663-1714 Human lymphadenopathy virus (MAL isolate), complete genome.
TTTTTTAGGGAAAATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTT
>BMDT01000023.1/1350-1401 BMDT01000023.1 Enterococcus alcedinis CCM 8433 DNA, sequence23, whole genome shotgun sequence
TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTT
>BMOE01000030.1/1403-1454 BMOE01000030.1 Deinococcus aquiradiocola JCM 14371 DNA, sequence30, whole genome shotgun sequence
TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTT
>M17451.1/1605-1656 Human immunodeficiency virus type 1, isolate RF (HAT-3), complete genome.
TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAACTTTCTT
>M62320.1/1534-1585 Human immunodeficiency virus type 1 Ugandan isolate U455, complete proviral genome.
TTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGGAATTTTCCT
>K02007.1/2092-2143 Human immunodeficiency virus type 1, isolate ARV-2/SF2, complete proviral genome.
TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTT
>K02013.1/1631-1682 Human immunodeficiency virus type 1, isolate BRU, complete genome (LAV-1).
TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTT
>K03455.1/2085-2136 Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome.
TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTT
>FM877783.1/2099-2150 FM877783.1 HIV-1 M_97CD.MBFE250 proviral complete genome, isolate 97CD.MBFE250
TTTTTTAGGGAAAATTTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTTCCT
>M93258.1/2083-2134 M93258.1 Human immunodeficiency virus type 1 (YU-2) RNA
TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGAAATTTTCTT
>FM877779.2/2091-2142 HIV-1 M_02CD.LBTB032 proviral complete genome, isolate 02CD.LBTB032
TTTTTTAGGGAAAATCTGGCCTTCCAACAAGGGGAGGCCAGGGAACTTTCCT
>AM851090.1/1296-1347 AM851090.1 Human immunodeficiency virus type 1 02CD.LBR024 proviral gag gene (partial), vif gene, nef gene and env gene
TTTTTTAGGGAAAATTTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTTCTC
>FM877781.1/2086-2137 HIV-1 M_02CD.LBTB084 proviral complete genome, isolate 02CD.LBTB084
TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAACTTTCCT
>FM877778.1/2093-2144 FM877778.1 HIV-1 M_97CD.KFE267 proviral complete genome, isolate 97CD.KFE267
TTTTTTAGGGAAAATCTGGCCTTCCTACAAGGGGAGGCCAGGAAACTTTCCT
>DQ373063.1/1622-1673 Simian immunodeficiency virus isolate SIVcpzMB66, complete genome.
TTTTTTAGGGAAACTCTGGCCTTCCAGCAAGGGAAGGCCAGGGAATTTCCTT
>JX679207.1/1307-1358 JX679207.1 Human immunodeficiency virus from China isolate 1439, partial genome
TTTTTTAGGGAAACTTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTC
>KJ206289.1/1436-1487 KJ206289.1 Human immunodeficiency virus isolate 10MYPR226, partial genome
TTTTTTAGGGAGATTCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCTT
>FM877782.1/2096-2147 FM877782.1 HIV-1 M_02CD.MBTB047 proviral complete genome, isolate 02CD.MBTB047
TTTTTTAGGGAGATTCTGGCCTCCCAACAAGGGGAGGCCAGGGAATTTTCCT
>AF005496.1/1435-1486 HIV-1 isolate 90CR056 from Central African Republic, complete genome.
TTTTTTAGGGAAAATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTTCTC
>U46016.1/1456-1507 U46016.1 Human immunodeficiency virus type 1 subtype C complete proviral genome
TTTTTTAGGGAGACTTTGGCCTTCCAACAAGGGAAGGCCAGGGAATTTCCTT
>AF077336.1/1422-1473 HIV-1 isolate VI850 from Democratic Republic of the Congo, complete genome.
TTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCCGGAAATTTCCTT
>AF193276.1/1311-1362 HIV-1 CRF03_AB isolate KAL153 from Russia, complete genome.
TTTTTTAGGGAGAATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTTCCT
>K03454.1/1634-1685 Human immunodeficiency virus type 1, isolate ELI, complete genome.
TTTTTTAGGGAGAATTTGGCCTTCCCACAAGGGAAGGCCGGGGAACTTTCTC
>AF049337.1/1454-1505 HIV-1 CRF04_cpx clone 94CY032-3 from Cyprus, complete genome.
TTTTTTAGGGAGAATGTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTTCTT
>U52953.1/1426-1477 U52953.1 HIV-1 92BR025 from Brazil, complete genome
TTTTTTAGGGAAAATTTGGCCTTCCCACAGGGGGAGGCCAGGAAATCTTCTT
>FM877784.1/1283-1334 HIV-1 M_97CD.KMST91 proviral gag, pol , vif, vpr, vpu, gp160 and nef (partial) genes, isolate 97CD.KMST91
TTTTTTAGGGAAAATTTGGCCTTCTCAAAAGGGGAGGCCAGGGAACTTTCCT
>DQ373065.1/1639-1690 Simian immunodeficiency virus isolate SIVcpzEK505, complete genome.
TTTTTTAGGGAAGGTCTGGCCTCTCTCCAAAGGGAGGCCAGGAAATTTCCCC
>M17449.1/2091-2139 Human immunodeficiency virus type 1, isolate MN, complete genome.
TTTTTTAGGGAAGATCTGGCCTTCCTGCAAGGGAAGGCGGAATTTTCCT
>AF067154.1/1449-1500 HIV-1 isolate 301999 from India, complete genome.
UUUUUUAGGGAAAAUUUGGCCUUCCCACAAGGGGAGGCCAGGGAAUUUCCUU
>AF349363.1/33-84 HIV-1 isolate VRI116957 from USA pol polyprotein (pol) gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCCCACAAGGGGAGGCCAGGGAAUUUUCUC
>AF156820.1/43-94 HIV-1 isolate patient 2 clone C-1-97 from USA pol polyprotein gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCCUACAAGGGAAGGCCAGGGAAUUUUUUU
>AY090761.1/678-729 HIV-1 isolate 92BR018 from Brazil gag protein (gag) gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAACUUCUUU
>AJ488926.1/1306-1357 Human immunodeficiency virus type 1 partial proviral genome, patient 99TCD.MN011
UUUUUUAGGGAAAAUUUGGCCUUCCAGCAAGGGAAGGCCGGGAAAUUUUCUU
>AF286239.1/1448-1499 HIV-1 isolate 97KR004 from South Korea, complete genome.
UUUUUUAGGGAAAAUUUGGCCUUCCCACAGCGGGAGGCCAGGGAAUUUUCCU
>AJ249236.1/1281-1332 Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255
UUUUUUAGGGAAAAUUUGGCCUUCCAACAGGGGGAGGCCAGGAAAUUUUCUU
>AY563170.1/1281-1332 HIV-1 isolate ARG4006 from Argentina gag protein (gag) and pol polyprotein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), env protein (env), and nef protein (nef)
UUUUUUAGGGAAAAUUUGGCCUUCCAACAAGGGAAGGCCAGGAAAUUUYCUC
>AF484493.1/1290-1341 HIV-1 isolate 99UGG03379 from Uganda, partial genome.
UUUUUUAGGGAAAAUUUGGCCUUCCCACAAGGGGAGGCCAGGAAAUUUUCCC
>AY206650.1/1302-1353 HIV-1 from USA patient R1 gag protein (gag) gene, complete cds.
UUUUUUAGGGAAAAUCUGGCCUUCCCACAAAGGAAGGCCAGGGAAUUUUCUU
>AY535721.1/171-222 HIV-1 isolate K33 from Estonia gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGGAAAAUCUGGCCUUCCAACAAGGGGAGGCCAGGGAACUUUCUU
>AJ286137.1/52-103 Human immunodeficiency virus type 1 proviral partial pol gene, isolate 97CM.MP810
UUUUUUAGGGAGAAUUUGGCCUUCCAGCAAGGGGAGGCCAGGAAAUUUCCCU
>AY181067.1/27-78 HIV-1 isolate 3-018910 from Nigeria gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGGAAAAUUUGGCCUUCCAGCAAAGGGAGGCCAGGAAACUUUCCC
>AY140131.1/1170-1221 HIV-1 isolate 38 from Argentina nonfunctional gag protein gene, partial sequence.
UUUUUUAGGGAAAAUUUUGCCUUCCCACAAGGGGAGGCCCGGAAACUUCUCC
>L11789.1/1281-1332 Human immunodeficiency virus type 1 gag gene, isolate VI325, 5' end.
UUUUUUAGGGAAAAUUUGGCCUUCCAACAAAGGGAAGCCAGGGAAUUUUCUC
>AJ535032.1/23-74 Human immunodeficiency virus type 1 proviral partial genes for pol and gag polyproteins, patient PT4632
UUUUUUAAGGAAAAUUUGGCCUUCCAACAAGAGGAGGCCAGGGAAUUUUCUC
>AY165215.1/142-193 HIV-1 isolate 99SE-17203 from Sweden gag-pol fusion polyprotein gene, partial cds.
UUUUUUAGGGAGACUUUGGCCUUCCCACAAGGGGAGGCCAGGGAAUUUUCCU
>AY519079.1/46-97 HIV-1 isolate 00_8_019259_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAAAUYUGGCCUUCCCACAAGGGRAGGCCAGGRAACUUUCCU
>AY037273.1/1284-1335 HIV-1 isolate ARMA062 from Argentina vif gene, partial sequence; vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; and long terminal repeat, complete sequence.
UUUUUUAAAGAAAAUUUUGCCUUCCCACAAGGGGAGGCCUAGAAAUUUCCUU
>AY682547.1/1576-1627 HIV-1 isolate 04RU128005 from Russia, complete genome.
UUUUUUARRGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUUUCCUU
>AY093603.1/1290-1341 HIV-1 isolate 95SN1795 from Senegal, complete genome.
UUUUUUAGGGAAGAUUUGGCCUUCCCACAAGGGGAGGCCAGGGAACUUUCCU
>AY358059.1/1284-1335 HIV-1 01TH.OUR702I from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and env protein (env) genes, complete cds; and nef p
UUUUUUAGGGAAAAUUUGGCCUUCCAACAAGGGAAGGCCAGGGAAUUUUCCU
>AF442571.1/584-635 HIV-1 clone TZBGP0025 from Tanzania, partial genome.
UUUUUUAGGGAGAAUUUGGCCUUCCAACAAGGGAAGGCCAGGAAACUUCCUU
>AY519118.1/46-97 HIV-1 isolate 00_8_019469_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAGAUCUGGYCUUCYCACAAGGGAAGGCCAGGGAAUUUURUU
>AY455779.1/1536-1587 HIV-1 isolate 94BR-RJ-97 from Brazil, complete genome.
UUUUUUAGGGAAAAUUUGGCCUUCCCACAAGGAAAGGCCCGGGAAUUUCCCU
>L11756.1/1299-1350 Human immunodeficiency virus type 1 gag gene, isolate CI32, 5' end.
UUUUAUAGGGAAAAUCUGGCCUUCCAGCAAGGGGAGGCCAGGAAAUUUUCCU
>AF408627.1/1519-1570 HIV-1 isolate A047 from Argentina, complete genome.
UUUUUUAAGGAAAAUUUGGCCUUCCAACAAGGGGAGGCCGGGAAAUUUCCUU
>AY140557.1/891-942 HIV-1 isolate 97CIRMF09 from Gabon gag protein (gag) gene, partial cds.
UUUUUUAAGGAAAAUUUGGCCUUCCAACAAGGGAAGGCCAGAAAAUUUUCUU
>AY519101.1/46-97 HIV-1 isolate 00_8_019353_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUUCCCACAAGGGGAGGCCAGGRAAYUUYCUR
>AY255816.1/1280-1331 HIV-1 isolate 00ET527.162.37 from Ethiopia gag protein (gag) gene, partial cds.
UUUUUUAGGGAAAWWWWGGCCUUCCCACAAGGGGAGGCCAGGGAAUUUCCUU
>AY484783.1/10-61 HIV-1 isolate 25822-16 protease (pol) gene, partial cds.
GUUUUUAGGGAAAAUCUGGCCUUCCCACAAGGGGAGGCCAGGGAAUUUUCAU
>AY492778.1/819-870 HIV-1 isolate 99KE570 from Kenya gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGGAAAAUUUGGCCUUCCAACAAAGGAAGGCCGGGGAAUUUCCUU
>AF156840.1/71-122 HIV-1 isolate patient 2 clone P-6-96 from USA pol polyprotein gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCUUCCAGGGGAAGGCCAGGGAAUUUUCUU
>AF247519.1/1233-1284 HIV-1 isolate R890820 from Netherlands gag protein and pol protein genes, partial cds.
UUUUUUAGGGAAAAUUUGGCCUUCCCACAAGGGAAGGCCGGGGAACUUUCUC
>AF119819.1/2102-2153 HIV-1 strain GR84 complete genome.
UUCUUUAGGGAGAAUGUGGCCUUCCAGCAAGGGGAGGCCAGGAAAUUUUCUU
>U21135.1/2084-2135 Human immunodeficiency virus type 1 clone WEAU 1.60, complete genome.
UUUUUUAGGGAAGAUCUGGUCUUCCCAAAAGGGAAGGCCAGGGAAUUUUCCU
>AB074055.1/1347-1398 Human immunodeficiency virus type 1 proviral gag pseudogene for gag polyprotein, clone:IMS3-5.
UUUUUUAGGAAAGAUCCGGCCUUCCCACAAGGAGAGGCCAAGGAAUUUUCUU
>AY371167.1/1284-1335 HIV-1 isolate 01CM.0130NY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) and nonfunctional rev protein (rev) genes, comp
UUUUUUAGGGAGAAUUUGGCCUUCCAACAGAGGGAGGCCCGGAAAUUUUCCU
>AF024053.1/108-159 HIV-1 patient 4 clone MaBV55_49 from the USA, gag protein p7,p1,p6 region (gag) gene, partial cds.
UUUUUUAGGGAAAGUCCGGCCUUCCUCCAAGGGAAGGCCAGGGAAUUUUCUU
>AY331287.1/1296-1347 HIV-1 isolate 1013-03 from USA, complete genome.
UUUUUUAGGGAAGCUCUGGCCUUCUCAGAAGGGAAGGCCAGGGAAUUUUCUU
>AY484777.1/1-50 HIV-1 isolate 25437-9 protease (pol) gene, partial cds.
UUUUAGGGAAAAUCUGGCCUUCCCACAAGGGGAGGCCAGGAAAUUUUCUU
>AY492788.1/854-904 HIV-1 isolate 99KE593 from Kenya gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUACGGAAAUUUUGGCCUUCCCACAAGGGAAGGCCAGGGACUUCCUU
>AJ405961.1/1-52 Human immunodeficiency virus type 1 proviral partial pol gene for POL precursor 1, isolate 99FR-714mal
UUUUUUAGGGAAAGUUUGGCCUUGGAGCAAGGGAAGGCCAGGGCAUUUCCUU
>AY322191.1/1547-1598 HIV-1 isolate ML672-3-1997 from Kenya, complete genome.
UUUUUUAGGGAGAAUUUGGCCUCCCAACAAGGGGAGGCCAGGAAACUUUCCU
>AY519082.1/46-97 HIV-1 isolate 00_8_019262_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCCCACAGGGGGAGGCCAGGAAAUUUCCUU
>AY518946.1/46-97 HIV-1 isolate 00_8_015633_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUUCCCACARGGGGRGGCCAGGGAAUUUUCUU
>AY304893.1/1283-1334 HIV-1 isolate 00ET665.156.132 gag protein (gag) gene, partial cds.
UUUUUUAGGGAGAAUGUGGCCUUCCAGCAAGGGGAGGCCAGGGAACUUCAUU
>AY165261.1/239-290 HIV-1 isolate 01SE-21665 from Sweden gag-pol fusion polyprotein gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUGUCCACAAGGACAGGCCAGGGAAUUUUUGU
>AY165229.1/242-293 HIV-1 isolate 00SE-19100 from Sweden gag-pol fusion polyprotein gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCCUCCAARGGAAGGCCAGGGAAUUUUCUC
>AY253307.1/1299-1350 HIV-1 isolate 01TZA207 from Tanzania gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein
UUUUUUAGGAAGACUCUGGCCUUCCCACAAGGGGAGGCCAGGAAAUUUCCUU
>AF282967.1/1-52 HIV-1 isolate 1109 from Switzerland gag protein (gag) gene and pol protein (pol) gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUUCCCACAAGGAAAGGCCAGGGAAUUUUUUA
>AB078714.1/1275-1326 Human immunodeficiency virus 1 gene for gag-pol polyprotein, gag-RT region, isolate:DH017.
UUUUUUAGGCAAGCUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUUUUACU
>AF005494.1/1413-1464 HIV-1 isolate 93br020 from Brazil complete genome.
UUUUUUAGGGAAAAUUUGGCCUUCCAACAAGGGGAGGCCCGGAAACUUCAUC
>AY519017.1/46-97 HIV-1 isolate 00_8_019130_01 from USA gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAAGUCUGGCCUUUCCACAAGGAAAGGCCAGGGAACUUUCAC
>AJ583741.1/51-102 Human immunodeficiency virus 1 partial pol gene for protease-rt, genomic RNA, isolate 98SN-10Hald(3/12/98)
UUUUUUAGGGAAAAUUUGGCCUUCCAACAAAGGGAGGCCGGGAAACUUUCUU
>AY371144.1/1284-1335 HIV-1 isolate 02CM.1590LE from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, co
UUUUUUAAGGAAAAUUUAGCCUUCCAGCAAAGGGAGGCCAAGGAAUUUUCCU
>AF457057.1/1284-1335 HIV-1 isolate 00KE_KER2018 from Kenya, partial genome.
UUUUUUAAAGAGAAUUUAGCCUUCCAGCAAGAAGAGGCCAGGAAAUUUUCCU
>AF293420.1/1-52 HIV-1 isolate 1106 subtype B gag protein (gag) gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUCCCUGCAAGGGAAGGCCAGGAAAUUUUCUU
>AY519076.1/46-97 HIV-1 isolate 00_8_019256_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGAAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAACUUCCUG
>AB074075.1/1326-1377 Human immunodeficiency virus type 1 proviral gag pseudogene for gag polyprotein, clone:IMS10-19.
UUUUUUAAGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAAAGAAUUUCCUU
>AF024243.1/90-141 HIV-1 patient 7 clone DiBV02_09 from the USA, gag protein p7,p1,p6 region (gag) gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCCCACAAGGGGGGGCCAAGGAAUUUCCUU
>AJ006022.1/1658-1709 Human immunodeficiency virus type 1 complete proviral genome
UUUUUUAGGGAAGAGCUGGUCUCCCUUCAAAGGGAGACCAGGAAACUUCCCC
>AY371154.1/1293-1344 HIV-1 isolate 02CM.3226MN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, comple
UUUUUUAGGGAAGAUCUGGCCUUCCAGCAGUGGGAGGCCAGGGAAUUUUCUU
>AY518966.1/46-97 HIV-1 isolate 00_8_018778_01 from Canada nonfunctional gag-pol polyprotein gene, partial sequence.
UUUUUUAGGGAAAAUCUGGCCUUCCUCCAGGGGGAGGCCAGGGAACUUUCUG
>AB097866.1/1400-1451 Human immunodeficiency virus 1 proviral DNA, nearly complete genome, isolate:mCSW503.
UUUUUUAGGGAAAAUCUGGCCUUCCCACGAGGGGAGGCCAGGGAACUUCCUC
>AJ291719.1/2082-2133 Human immunodeficiency virus type 1 complete genome, strain 99FR-MP129
UUUUUUAGGGAAAAUCUGGCCUUCCAGCAAGGGAAGGCCAGGGAAUUUUAUC
>AY140149.1/1173-1221 HIV-1 isolate 57 from Argentina nonfunctional gag protein gene, partial sequence.
UUUUUUAGGGAGAAUGUGGCCUUCCAGCAAGGGGAGGCCGGGAAUUCCU
>AJ313391.1/51-102 Human immunodeficiency virus type 1 partial pol gene, genomic RNA, isolate 00GAB-LBV02-08
UUUUUUAGGGAAAAUUUUGCCUCCCAGCAAGGGGAGGCCAGGAAAUUUUCCU
>AF411964.1/2087-2138 HIV-1 isolate 99ZACM4 from South Africa, complete genome.
UUUUUUAGGGAAAAUUUGGCCUUCCCGCAACGGGAGGCCAGGAAACUUUCUU
>AF024423.1/123-174 HIV-1 patient 8 clone LaBV56_17 from the USA, gag protein p7,p1,p6 region (gag) gene, partial cds.
UUUUUUAGGAAAAAUCUGGCCUUCCCACGAGGGGAGGCCAAGGAAUUUCCUU
>AY322189.1/1554-1605 HIV-1 isolate ML415-2-1997 from Kenya, complete genome.
UUUUUUAGGGAAAAUCUGGCCUUCCAACAAAGGAAGGCCAGGGAACUUCCCU
>AY561244.1/1200-1251 HIV-1 isolate PCM031 from Colombia gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and vpu protein (vpu) genes, complete cds; and envelope glycoprotein (env) gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCCUCCAAGGGAAGGCCAGGGAACUUCCUU
>AY492785.1/846-897 HIV-1 isolate 97KE099 from Kenya gag protein (gag) and pol protein (pol) genes, partial cds.
AUUUUUAGGGAAAAUUUGGCCUUCCAACAAUGGGAGGCCAGGGAAUUUUCUU
>AJ437033.1/1299-1350 Human immunodeficiency virus type 1 mRNA for gag polyprotein (gag gene), clone g21s1
UUUUUUAGGGAGAAUCUGGCCUUCCCACAAGGAAAGGCCAGGGAAUUUUCCU
>U29410.1/1299-1350 Human immunodeficiency virus type 1 gag gene, clone 3-22, partial cds.
UUUUUCAGGGAAGACCUGGUCUUCCCACAAGGGAAGGCCAGGGAACUUUCUU
>AY518943.1/46-97 HIV-1 isolate 00_8_015630_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUUCCCACAARGGRAGGCCAGGGAAUUUYCUG
>U26546.1/1464-1515 Human immunodeficiency virus type 1 clade B, proviral clone.
UUUUUUAGGGAAWAUCCGGCCUUCCCACAUKGGAAGGCCAGGGRAUUUCCUU
>AY561238.1/1290-1341 HIV-1 isolate PCM034 from Colombia genomic sequence.
UUUUUUARGGAAAAUCUGGCCUUCCCACAAGGGGAGGCCAGGAAAUUUCCUC
>AY140558.1/888-939 HIV-1 isolate 97CIRMF37 from Gabon gag protein (gag) gene, partial cds.
UUUUUUAGGGAAAAUUUGGCCUCCCAGCAAGGGGAGGCCAGGGAAUUUUCUC
>AY484784.1/1-48 HIV-1 isolate 24351-17 protease (pol) gene, partial cds.
UUAGGGAAGGUCUGGCCUUCCCACAAGGGGAGGCCAGGGAACUUUCUU
>U53656.1/165-216 HIV-1 clone D1.03 from USA, gag polyprotein, partial cds.
UUUUUUAAAGAAGAUCUGGCCUUCCUACAAGGGGAGGCCAGAGAAUUUUCUU
>AY536235.1/1541-1592 HIV-1 isolate CH12 from Chile, complete genome.
UUUYYUAGGGAGAAUUUGGCCUUCCAACAAGGGGAGGCCAGGAAAUUUCCUU
>AY165197.1/238-289 HIV-1 isolate 98SE-15418 from Sweden gag-pol fusion polyprotein gene, partial cds.
UUUUUUAGGGAAGAUCUGGYCUUCCCGGAAGGGAAGGCCAGGGAAUUUUCUU
>AY535742.1/171-222 HIV-1 isolate TV84 from Estonia gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGAAAAAUCUGGCCYUCCUACAAGGRGAGGCCAGGGAACUUYCUU
>AF443114.1/1446-1497 HIV-1 isolate 00BW3970.2 from Botswana, complete genome.
UUUUUUAGGGAGAUUUUGGCCUUCCCAGAAGGGGAGGCCUGGGAAUUUCCUU
>U29404.1/1299-1350 Human immunodeficiency virus type 1 gag gene, clone 3-14, partial cds.
UUUUUUAGGGAAAACCUGGCCUUCCCUCAAGGGAAGGCCAGGGAACUUUCUU
>AF484510.1/1293-1344 HIV-1 isolate 98UG57139 from Uganda, partial genome.
UUUUUUAGGAAAAAUUUGGCCUUCCCGCAACGGAAGGCCAGGGAACUUCCUU
>AY358053.1/1284-1335 HIV-1 01TH.OUR598I from Thailand nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; nonfunctional vif protein (vif) gene, complete sequence; vpr protein (vpr), tat protein (tat), and rev protein (re
UUUUUUAAGGAAAUUUUGGCCUUCCAACAAGGGAAGGCCGAGGAAUUUUCCU
>AY535670.1/171-222 HIV-1 isolate 041 from Estonia truncated gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAAGAAAAAUCUGGCCUUCCUACAAAAGGAGGCCAAGGAACUUUCUU
>AY358063.1/1284-1335 HIV-1 00TH.OUR810I from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and env protein (env) genes, complete cds; and nef p
UUUUUUAGGAAAGCUUUGGCCUUCCAACAAGGGAAGGCCGGGGAAUUUUCCU
>AY492772.1/840-891 HIV-1 isolate 99KE532 from Kenya gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGGAAAUUCUGGCCUUCCCACAGUGGGAGGCCAGGGAAUUUUCUU
>X52154.1/2152-2203 Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome
UUUUUUAGGGAAAGGUUGGCCUUCCCGCAGCGGGAGGCCAGGCAACUUUGUG
>AY181081.1/46-97 HIV-1 isolate 01-100089 from Nigeria gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGGARRAUYUGGCCUUCCAGCAAGGGGAGGCCAGGGAAUUUCCUU
>AY519093.1/46-97 HIV-1 isolate 00_8_019337_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUUCCCACUCRGGRAGGCCAGGGAAUUUUCUU
>AY561241.1/1290-1341 HIV-1 isolate COL105 from Colombia genomic sequence.
UUUUUUAAAGAAAAUCUGGCCUUCCUCCAAGGGAAGGCCAAGAAAUUUUCUU
>AB074076.1/1320-1371 Human immunodeficiency virus type 1 proviral gag psuedogene for gag polyprotein, clone:IMS11-4.
UUUUUUAAAGAAGAUCUGGCCUUCCCACAGUGGAAGGCCAAAGAAUUUUUUU
>AY535690.1/171-222 HIV-1 isolate 029 from Estonia gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGAARAAUCUGGCCUUCCUACAAGGGGAGGCCARGGAACUUUCUU
>AF323226.1/65-116 HIV-1 clone 126 from Australia gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGGAAAWUCUGGCCUUCCCNCAAGGGCAGGCCAGGGAAUUUUYUU
>AF484485.1/1293-1344 HIV-1 isolate 99UGD23550 from Uganda, partial genome.
UUUUUUAGGGAAAAUUUGGCCUUCCCACAGAGGAAGGCCAGGGAACUUCCUU
>AJ313421.1/50-101 Human immunodeficiency virus type 1 partial pol gene, genomic RNA, isolate 00GAB-22S
UUUUUUAGGGAAAAUUUGGCCUCUCAACAAAGGGAGGCCAGGGAACUUUCCU
>AY181075.1/46-97 HIV-1 isolate 01-100083 from Nigeria gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGGARAAUUUGGCCUUCCMACARGGGGRGGCCAGGGAAUUUYCUU
>AB097867.1/1478-1529 Human immunodeficiency virus 1 proviral DNA, nearly complete genome, isolate:mCSW104.
UUUUUUAGGGAAGCUAUGGCCUUCCGACAGAGGAAGGCCGGGGAAUUUUCCU
>AY484781.1/1-50 HIV-1 isolate 25725-13 protease (pol) gene, partial cds.
UUUUAGAGAAAAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUUUCGUU
>AF024385.1/93-144 HIV-1 patient 8 clone LaBV35_43 from the USA, gag protein p7,p1,p6 region (gag) gene, partial cds.
UUUUUUAGGGAAAAUCUGGCCUCCCCUUGUGGGGAGGCCAGGGAACUUCCUU
>AJ313415.1/51-102 Human immunodeficiency virus type 1 partial pol gene, genomic RNA, isolate 00GAB-14M
UUUUUUAGGGAGAAUCUGGCCUUCCAGCAAAGGGAGGCCAGGGAACUUUCUC
>AF457051.1/1293-1344 HIV-1 isolate 99KE_KER2003 from Kenya, partial genome.
UUUUUUAGGGAAAAUUUGGCCUUCCUCCAAGGGGAGGCCGGGGAACUUUCUU
>AF286240.1/914-965 HIV-1 isolate 97CDKFE4 from Republic of the Congo gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGGAAAAUUUGGCCUCCCAACAGAGGGAGGCCAGGAAAUUUUCCC
>AY304963.1/1283-1334 HIV-1 isolate 00ET666.175.173 truncated gag protein (gag) gene, partial cds.
UUUUUUAAAGAAAAUUUGGCCUUCCCACAAAAGGAGGCCAAAGAAUUUCCUU
>AF042105.1/1440-1491 HIV-1 isolate MBCD36 from Australia, complete genome.
UUUUUUAGGAAAAAUCUGGCCUUCCCACAAGGGGAGGCAAGAGAACUUUCUU
>AF457088.1/1278-1329 HIV-1 isolate 00KE_NKU3004 from Kenya, partial genome.
UUUUUUAGGGAAGAUUUGGCCUUCCAACAAAGGGAGGCCAGGAAAUUUUCCU
>AY037269.1/1290-1341 HIV-1 isolate ARMS008 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (ne
UUUUUUAGGGAAAAUAUGGCCUUCCAACAGCGGAAGGCCAGGGAAUUUCCUU
>AF442567.1/1455-1506 HIV-1 clone TZBFL0170 from Tanzania, partial genome.
UUUUUUAAAGAAAAUUUGGCCUUCCAACAAGGGAAGGCCAAGGAACUUCCUU
>AY519015.1/46-97 HIV-1 isolate 00_8_019128_01 from USA gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGAAACUUUCUU
>AF457071.1/1281-1332 HIV-1 isolate 00KE_KNH1214 from Kenya, partial genome.
UUUUUUAAGAAGAAUUUGGCCUUCCAGCAAGAGGAGGCCAGGAAAUUUUCCU
>AY441922.1/80-131 HIV-1 isolate SP120_00 from Brazil nonfunctional protease (pol) gene, partial sequence.
UUUUUUAGGGAAAAUCUGGCCUUCCCACAAGGGRAGGCCAGGRAAUUUUSUC
>AY140137.1/1034-1085 HIV-1 isolate 45 from Argentina nonfunctional gag protein gene, partial sequence.
UUUUNUACGGAGAAUUUGGCCAUCCANCAAGGGGCCGUCCGNCAAUUUCAUU
>AY253315.1/1287-1338 HIV-1 isolate 01TZA355 from Tanzania gag protein (gag) and truncated pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and n
UUUUUUGGGGAAAAUCUGGCCUUCCCACAAAGGGAGGCCAGGAAAUUUCCUU
>AY255828.1/1281-1332 HIV-1 isolate 99ET8 from Ethiopia truncated gag polyprotein precursor (gag) gene, partial cds; vif protein (vif) gene, complete cds; vpr gene, complete sequence; truncated tat protein (tat) gene, complete cds; rev gene, complete sequence; t
UUUUUUAGAGAAAAUUUAGCCUUCCAACAAGGGGAGGCCAAAGAAUUUCCUU
>AF119820.1/2110-2161 HIV-1 strain GR11 complete genome.
UUUUUUAGGGAGAAUGUGGCCUUCCAGCAAAGGAAGGCCGGGGAAUUUUCUU
>AF443109.1/1467-1518 HIV-1 isolate 00BW3842.8 from Botswana, complete genome.
UUUUUUAGGGAAGAUUUGGCCUUCCCGCGGAGGAAGGCCAGGGAAUUUCCUU
>AF076998.1/1440-1491 HIV-1 isolate VI961 from Democratic Republic of the Congo, complete genome.
UUUUUUAGGGAGAGUUUGGCUUUCCCACAAGGGAAGGCCAGGGAAUUUCCUC
>AY455784.1/1548-1599 HIV-1 isolate 94BR-RJ-59 from Brazil, complete genome.
UUUUUUAGGGAAAAUUUGGCCUUCCCCCCAGGGGAGGCCCGGCAAUUUCCUU
>AJ249235.1/1281-1332 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 97ZR-EQTB11
UUUUUUAGGGAAGUUCUGGCCUCUCAACAAAGAGAGGCCAGGAAAUUUUCUU
>AF457059.1/1287-1338 HIV-1 isolate 99KE_KISII5003 from Kenya, partial genome.
UUUUUUAGGGAGACUUUGGUCUUCCCACAAGGGAAGGCCAGGGAACUUCCUC
>AF442570.1/1448-1499 HIV-1 clone TZBFL0088 from Tanzania, partial genome.
UUUUUUAGGGAAAAUCUGGCCUUUCCGCAGGGACAGGCCAGGGAACUUCCUU
>L11771.1/1296-1347 Human immunodeficiency virus type 1 gag gene, isolate K31, 5' end.
UUUUUUAGGGAGACUUUGGCCUUCCCGCAAGGGAGGGCCUGGAAACUUCCUU
>L11798.1/1290-1341 Human immunodeficiency virus type 1 gag gene, isolate UG266, 5' end.
UUUUUUAAAGAAAAUUUGGCCUUCCAGCAAGGGGAGGCCAAGGAACUUUCCU
>AF408626.1/1506-1557 HIV-1 isolate A025 from Argentina, complete genome.
UUUUUUAGGGAAAAUUUGGCCUUUCCACAAGGGGAGGCCCGGGAAUUUUAUU
>AY037266.1/1278-1329 HIV-1 isolate ARCH014 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (ne
UUUUUUAGGGAAAAUUUGGCCUUCCAACAGUGGGAGGCCCGGGAAUUUCCUU
>AY165283.1/224-275 HIV-1 isolate 00SE-18766 from Sweden gag-pol fusion polyprotein gene, partial cds.
UUUUUUAGGGAAACUUUGGCCUUCCAGCAAAGGGAGGCCAGGGAAUUUUCCU
>AY535669.1/171-222 HIV-1 isolate K19 from Estonia truncated gag protein (gag) and pol protein (pol) genes, partial cds.
UUUUUUAGGAAAAAUCUGGCCUUCCUACAAAAGGAGGCCAGGAAAUUUUCUU
>U53654.1/165-216 HIV-1 clone D1.01 from USA, gag polyprotein, partial cds.
UUUUUUAAGGAAGAUCUGGCCUUCCUACAAAAAGAGGCCAAGGAAUUUUCUU
>AF484496.1/1275-1326 HIV-1 isolate 99UGJ21953 from Uganda, partial genome.
UUUUUUAGGGAAAAUCUGGCCUUCCCACAAGGGGAGGCCGGGAAACUUUCCA
>AB074070.1/1350-1401 Human immunodeficiency virus type 1 proviral gag pseudogene for gag polyprotein, clone:IMS9-9.
UUUUUUAAGGAAAAUCUGGCCUUCCCACAAGGGGAGGCCAAGGAAUUUUCUU
>AY140134.1/1158-1206 HIV-1 isolate 40 from Argentina nonfunctional gag protein gene, partial sequence.
UUUUUUAGGGAAAAUCUGGCCUUCUCACAAGGGAAGGCCAGGAAUUGUU
>AF484519.1/1293-1344 HIV-1 isolate 99UGF03726 from Uganda, partial genome.
UUUUUUAGGGAGAGCUUGGCCUUCCCUCAAGGGAAGGCCGGGGAACUUCCUC
>AY518978.1/46-97 HIV-1 isolate 00_8_018795_01 from Canada gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAAAUCUGGUCUUCCCACAAGGGAAGGCCAGGGAAUUUCCUG
>AY206647.1/1296-1347 HIV-1 from USA patient MDR1 gag protein (gag) gene, complete cds.
UUUUUUAGGGAAAAUCUGGCCUUCCCAGAAGGGAAGGCCGGGGAAUUUCCUU
>AF442568.1/1448-1499 HIV-1 clone TZBFL0169 from Tanzania, partial genome.
UUUUUUAGGGAAAAUUUGGCCUUCCAGCAAGAGGAGGCCAGAGAAUUUUCCU
>AY165211.1/236-287 HIV-1 isolate 99SE-17087 from Sweden gag-pol fusion polyprotein gene, partial cds.
UUUUUUAGGGAAAAUUUGGCCUUCCCGUGGGGGGAGGCCAGGGAAUUUCCUU
>AY358055.1/1284-1335 HIV-1 02TH.OUR658I from Thailand nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; nonfunctional vif protein (vif), nonfunctional vpr protein (vpr), and nonfunctional tat protein (tat) genes, compl
UUUUUUAAGGAAGAUUUGGCCUUCCAACAAAGGAAGGCCAAAGAAUUUUCCU
>AY518998.1/46-97 HIV-1 isolate 00_8_018834_01 from USA gag-pol polyprotein gene, partial cds.
UUUUUUAGGGAAGAUCUGGCCUUCCYACAAGGGGAGGCCAGGRAAUUUYCUU
>AB078707.1/1299-1350 Human immunodeficiency virus 1 gene for gag-pol polyprotein, gag-RT region, isolate:DH008.
UUUUUUAGGGAGGCUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUUUCCUC
>AF484483.1/1292-1343 HIV-1 isolate 99UGB32394 from Uganda, partial genome.
AUUUUUAGGGAGAUUUUGGCCUUCCCACAAGGGAAGGCCAGGGAAUUUCCUU
>AY140164.1/1155-1204 HIV-1 isolate 74 from Argentina gag protein gene, partial cds.
UUUUUUAGGGAAAAUUUGGCCUUCCAGCAAGGGGAGGCCAGGAAUUCCUC
>URS000080E22A_11676/1-45 RNA_(45-MER) from Human immunodeficiency virus 1 (PDB 2L94, chain A)
GGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUCUUCCC
>URS0002335978_11676/49-93 HIV frameshift stimulating sequence mRNA from Human immunodeficiency virus 1 (PDB 6VWL, chain 4)
AAUGUUCGAGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAA
