This page contains experimental datasets, results and associated scripts related to the paper Best hits of 11110110111 : modelfree selection and parameterfree sensitivity calculation of spaced seeds and its accompanying set of plots (pdf [dec 12, 2016] or html [dec 12, 2016]).
This content is related to the section Experiments of the paper.
The C++ code used to compute polynomials is integrated into the Iedera 1.06 α9
tool available at http://bioinfo.lifl.fr/yass/iedera.php
Dominance Pipeline
I.
dominance_iedera.sh

→  polynomial files : _n[14]_w[316]_s[632]_l[664].ied set of dominant seeds, data in txt format (tar.gz [dec 12, 2016])  → 
II.
paretoonly_{polynomialdiscrete}.py

→ 
seed selection files : _n[14]_w[316]_s[632]_l[664] _{bernoulli(reverse)integraldirac(reverse)heaviside} _python(_{maximamaple}).txt set of best seeds, data in txt format (tar.gz [dec 12, 2016]) 
→ 
III.
plot.py

→  _n[14]_w[316]_s[632] _{bernoulli(reverse)integraldirac(reverse)heaviside}.pdf best seeds pareto plots (pdf [dec 12, 2016] or html [dec 12, 2016]) 
→ 
The final set of pareto plots (pdf [dec 12, 2016] or html [dec 12, 2016]), data in txt format (tar.gz [dec 12, 2016]).