Bonsai :: Bioinformatics Software Server

Enter regulatory sequences [?]

Enter the sequences name (optional)

Available organisms:

rat

(rn4)

mouse

(mm9)

human

(hg19)

chicken

(galGal3)

d.melanogaster

(dm3)

Enter a list of RefSeq identifiers (NM_*)

Paste your data

or upload a file

Enter a set of sequences in FASTA format [?]

Paste your data

or upload a file

Location [?]
(boundaries of the sequences in regard of the TSS.				authorized values : -10000 to 5000)

Select transcription factor binding profiles [?]

Available weight matrices are public TRANSFAC (6.0) matrices and JASPAR 2009 vertebrate matrices

	Use public TRANSFAC matrices

	Use all JASPAR vertebrate matrices

	Use all available TRANSFAC and JASPAR matrices

	Select weight matrices in the list below


	Upload a file containing a list of weight matrice identifiers [?]

Adjust parameters [?]

Number of clusters to display [?] (max 25)
Maximum P-value [?]
Ratio (density of clusters) [?]

Enter your E-mail address (optional):

B$CRP_C
F$ABAA_01
F$ABF_C
F$ABF1_01
F$ADR1_01
F$GAL4_01
F$GAL4_C
F$GCN4_01
F$GCN4_C
F$GCR1_01
F$HAP234_01
F$HSF_01
F$HSF_02
F$HSF_03
F$HSF_04
F$HSF_05
F$LAC9_C
F$MAT1MC_01
F$MAT1MC_02
F$MATA1_01
F$MATALPHA2_01
F$MCM1_01
F$MIG1_01
F$NIT2_01
F$PACC_01
F$PHO4_01
F$QA1F_01
F$RAP1_C
F$REPCAR1_01
F$STE11_01
F$STRE_01
F$STUAP_01
I$ABDB_01
I$ADF1_Q6
I$BCD_01
I$BRCZ1_01
I$BRCZ2_01
I$BRCZ3_01
I$BRCZ4_01
I$CF1_01
I$CF1_02
I$CF2II_01
I$CF2II_02
I$CROC_01
I$DFD_01
I$DL_01
I$DL_02
I$dTCF_1
I$E74A_01
I$ELF1_01
I$FTZ_01
I$GCM_01
I$HAIRY_01
I$HB_01
I$HSF_01
I$HSF_02
I$HSF_03
I$HSF_04
I$HSF_05
I$KR_01
I$SN_01
I$SN_02
I$STAT_01
I$SUH_01
I$TTK69_01
I$UBX_01
I$ZESTE_Q2
N$CES2_01
N$SKN1_01
N$SKN1_02
P$AG_01
P$AGL3_01
P$AGL3_02
P$ATHB1_01
P$ATHB9_01
P$BZIP910_01
P$BZIP910_02
P$BZIP911_01
P$BZIP911_02
P$CDC5_01
P$DOF1_01
P$DOF2_01
P$DOF3_01
P$GAMYB_01
P$GBP_Q6
P$MYBPH3_01
P$MYBPH3_02
P$O2_01
P$P_01
P$PBF_01
P$RAV1_01
P$RAV1_02
P$SBF1_01
V$AHR_01
V$AHRARNT_01
V$AHRARNT_02
V$AML1_01
V$AP1_C
V$AP1_Q2
V$AP1_Q4
V$AP1_Q6
V$AP1FJ_Q2
V$AP2_Q6
V$AP4_01
V$AP4_Q5
V$AP4_Q6
V$AREB6_01
V$AREB6_02
V$AREB6_03
V$AREB6_04
V$ARNT_01
V$ARP1_01
V$ATF_01
V$BARBIE_01
V$BRACH_01
V$BRN2_01
V$CAAT_01
V$CAAT_C
V$CAP_01
V$CART1_01
V$CDP_01
V$CDP_02
V$CDPCR1_01
V$CDPCR3_01
V$CDPCR3HD_01
V$CDXA_01
V$CDXA_02
V$CEBP_01
V$CEBP_C
V$CEBP_Q2
V$CEBPA_01
V$CEBPB_01
V$CEBPB_02
V$CETS1P54_01
V$CETS1P54_02
V$CHOP_01
V$CLOX_01
V$CMYB_01
V$COMP1_01
V$COUP_01
V$CP2_01
V$CREB_01
V$CREB_02
V$CREB_Q2
V$CREB_Q4
V$CREBP1_01
V$CREBP1_Q2
V$CREBP1CJUN_01
V$CREL_01
V$DELTAEF1_01
V$E2_01
V$E2_Q6
V$E2F_01
V$E2F_02
V$E47_01
V$E47_02
V$E4BP4_01
V$EGR1_01
V$EGR2_01
V$EGR3_01
V$ELK1_01
V$ELK1_02
V$EN1_01
V$ER_Q6
V$EVI1_01
V$EVI1_02
V$EVI1_03
V$EVI1_04
V$EVI1_05
V$EVI1_06
V$FOXD3_01
V$FOXJ2_01
V$FOXJ2_02
V$FREAC2_01
V$FREAC3_01
V$FREAC4_01
V$FREAC7_01
V$GATA_C
V$GATA1_01
V$GATA1_02
V$GATA1_03
V$GATA1_04
V$GATA1_05
V$GATA1_06
V$GATA2_01
V$GATA2_02
V$GATA2_03
V$GATA3_01
V$GATA3_02
V$GATA3_03
V$GC_01
V$GFI1_01
V$GKLF_01
V$GR_Q6
V$GRE_C
V$HAND1E47_01
V$HEN1_01
V$HEN1_02
V$HFH1_01
V$HFH3_01
V$HFH8_01
V$HLF_01
V$HNF1_01
V$HNF1_C
V$HNF3B_01
V$HNF4_01
V$HNF4_01_B
V$HOX13_01
V$HOXA3_01
V$HSF1_01
V$HSF2_01
V$IK1_01
V$IK2_01
V$IK3_01
V$IRF1_01
V$IRF2_01
V$ISRE_01
V$LMO2COM_01
V$LMO2COM_02
V$LYF1_01
V$MAX_01
V$MEF2_01
V$MEF2_02
V$MEF2_03
V$MEF2_04
V$MEIS1_01
V$MEIS1A/HOXA9_01
V$MEIS1B/HOXA9_01
V$MIF1_01
V$MSX1_01
V$MYB_Q6
V$MYCMAX_01
V$MYCMAX_02
V$MYOD_01
V$MYOD_Q6
V$MYOGNF1_01
V$MZF1_01
V$MZF1_02
V$NF1_Q6
V$NFAT_Q6
V$NFE2_01
V$NFKAPPAB_01
V$NFKAPPAB50_01
V$NFKAPPAB65_01
V$NFKB_C
V$NFKB_Q6
V$NFY_01
V$NFY_C
V$NFY_Q6
V$NGFIC_01
V$NKX25_01
V$NKX25_02
V$NKX61_01
V$NMYC_01
V$NRF2_01
V$NRSF_01
V$OCT_C
V$OCT1_01
V$OCT1_02
V$OCT1_03
V$OCT1_04
V$OCT1_05
V$OCT1_06
V$OCT1_07
V$OCT1_Q6
V$OLF1_01
V$P300_01
V$P53_01
V$P53_02
V$PADS_C
V$PAX2_01
V$PAX3_01
V$PAX4_01
V$PAX4_02
V$PAX4_03
V$PAX4_04
V$PAX5_01
V$PAX5_02
V$PAX6_01
V$PBX1_01
V$PBX1_02
V$POLY_C
V$PPARA_01
V$R_01
V$RFX1_01
V$RFX1_02
V$RORA1_01
V$RORA2_01
V$RREB1_01
V$RSRFC4_01
V$S8_01
V$SEF1_C
V$SOX5_01
V$SOX9_B1
V$SP1_01
V$SP1_Q6
V$SREBP1_01
V$SREBP1_02
V$SRF_01
V$SRF_C
V$SRF_Q6
V$SRY_01
V$SRY_02
V$STAF_01
V$STAF_02
V$STAT_01
V$STAT1_01
V$STAT3_01
V$T3R_01
V$TAL1ALPHAE47_01
V$TAL1BETAE47_01
V$TAL1BETAITF2_01
V$TATA_01
V$TATA_C
V$TAXCREB_01
V$TAXCREB_02
V$TCF11_01
V$TCF11MAFG_01
V$TGIF_01
V$TST1_01
V$USF_01
V$USF_02
V$USF_C
V$USF_Q6
V$VBP_01
V$VJUN_01
V$VMAF_01
V$VMYB_01
V$VMYB_02
V$XBP1_01
V$XFD1_01
V$XFD2_01
V$XFD3_01
V$YY1_01
V$YY1_02
V$ZID_01
MA0002.2
MA0003.1
MA0004.1
MA0006.1
MA0007.1
MA0009.1
MA0014.1
MA0017.1
MA0018.2
MA0019.1
MA0024.1
MA0025.1
MA0027.1
MA0028.1
MA0029.1
MA0030.1
MA0031.1
MA0032.1
MA0033.1
MA0035.2
MA0036.1
MA0037.1
MA0038.1
MA0039.2
MA0040.1
MA0041.1
MA0042.1
MA0043.1
MA0046.1
MA0047.2
MA0048.1
MA0050.1
MA0051.1
MA0052.1
MA0055.1
MA0056.1
MA0057.1
MA0058.1
MA0059.1
MA0060.1
MA0061.1
MA0062.2
MA0063.1
MA0065.2
MA0066.1
MA0067.1
MA0068.1
MA0069.1
MA0070.1
MA0071.1
MA0072.1
MA0073.1
MA0074.1
MA0075.1
MA0076.1
MA0077.1
MA0078.1
MA0079.2
MA0080.2
MA0081.1
MA0083.1
MA0084.1
MA0087.1
MA0088.1
MA0089.1
MA0090.1
MA0091.1
MA0092.1
MA0093.1
MA0095.1
MA0098.1
MA0099.2
MA0100.1
MA0101.1
MA0102.2
MA0103.1
MA0104.2
MA0105.1
MA0106.1
MA0107.1
MA0108.2
MA0109.1
MA0111.1
MA0112.2
MA0113.1
MA0114.1
MA0115.1
MA0116.1
MA0117.1
MA0119.1
MA0122.1
MA0124.1
MA0125.1
MA0130.1
MA0131.1
MA0132.1
MA0133.1
MA0135.1
MA0136.1
MA0137.2
MA0138.2
MA0139.1
MA0140.1
MA0141.1
MA0142.1
MA0143.1
MA0144.1
MA0145.1
MA0146.1
MA0147.1
MA0148.1
MA0149.1
MA0150.1
MA0151.1
MA0152.1
MA0153.1
MA0154.1
MA0155.1
MA0156.1
MA0157.1
MA0158.1
MA0159.1
MA0160.1
MA0161.1
MA0162.1
MA0163.1
MA0164.1
MA0258.1
MA0259.1
MA0442.1

TFM-Explorer

Enter regulatory sequences [?]

Select transcription factor binding profiles [?]

Adjust parameters [?]