# Rectangular BLOSUM Scoring Matrix 8x8 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 62
# Entropy = 0.5343, Expected = -0.4444
CFYW MLIV G P ATS NH QED RK
CFYW 6 -1 -4 -5 -3 -2 -4 -4
MLIV -1 4 -5 -4 -2 -4 -4 -4
G -4 -5 8 -3 -1 -1 -3 -3
P -5 -4 -3 11 -1 -3 -2 -2
ATS -3 -2 -1 -1 4 -1 -1 -1
NH -2 -4 -1 -3 -1 7 0 -1
QED -4 -4 -3 -2 -1 0 5 0
RK -4 -4 -3 -2 -1 -1 0 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.227833, K+ = 0.144470, (K- = 0.115035, C = 0.129194, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 62
# Entropy = 0.5424, Expected = -0.4548
C FY W ML IV G P A T S N H QE D R K
CFYW 6 6 7 -1 -1 -4 -5 -2 -3 -3 -4 -1 -4 -5 -4 -4
MLIV -2 -1 -3 4 4 -5 -4 -1 -1 -3 -5 -4 -4 -5 -4 -3
G -4 -5 -4 -5 -5 8 -3 0 -2 0 -1 -3 -3 -2 -3 -2
P -4 -5 -5 -4 -4 -3 11 -1 -2 -1 -3 -3 -2 -2 -3 -2
ATS -1 -3 -4 -2 -1 -1 -1 4 4 4 0 -2 -1 -2 -2 -1
NH -4 -2 -5 -4 -5 -1 -3 -2 -1 0 7 8 0 1 -1 -1
QED -5 -4 -5 -4 -4 -3 -2 -2 -1 0 1 0 5 6 0 1
RK -5 -4 -4 -3 -4 -3 -2 -2 -1 -1 0 -1 1 -2 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.219609, K+ = 0.139913, (K- = 0.112327, C = 0.125616, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 62
# Entropy = 0.5451, Expected = -0.4588
C F Y W M L I V G P A T S N H Q E D R K
CFYW 6 6 6 7 -1 -1 -1 -2 -4 -5 -2 -3 -3 -4 -1 -4 -4 -5 -4 -4
MLIV -2 0 -2 -3 3 4 4 4 -5 -4 -1 -1 -3 -5 -4 -3 -4 -5 -4 -3
G -4 -5 -5 -4 -4 -5 -6 -5 8 -3 0 -2 0 -1 -3 -3 -3 -2 -3 -2
P -4 -5 -4 -5 -4 -4 -4 -4 -3 11 -1 -2 -1 -3 -3 -2 -2 -2 -3 -2
ATS -1 -3 -3 -4 -2 -2 -2 -1 -1 -1 4 4 4 0 -2 -1 -1 -2 -2 -1
NH -4 -3 0 -5 -3 -5 -5 -4 -1 -3 -2 -1 0 7 8 0 0 1 -1 -1
QED -5 -5 -3 -5 -3 -4 -5 -4 -3 -2 -2 -1 0 1 0 4 5 6 0 1
RK -5 -4 -3 -4 -2 -3 -4 -4 -3 -2 -2 -1 -1 0 -1 2 1 -2 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.223256, K+ = 0.142353, (K- = 0.113869, C = 0.127581, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 62
# Entropy = 0.6723, Expected = -0.5070
C FY W ML IV G P A T S N H QE D R K
C 9 -2 -2 -1 -1 -3 -3 0 -1 -1 -3 -3 -3 -3 -3 -3
FY -2 5 1 0 -1 -3 -3 -2 -2 -2 -3 0 -3 -3 -2 -3
W -2 1 11 -2 -3 -2 -4 -3 -2 -3 -4 -2 -2 -4 -3 -3
ML -1 0 -2 3 1 -3 -3 -1 -1 -2 -3 -2 -2 -3 -2 -2
IV -1 -1 -3 1 3 -3 -3 -1 0 -2 -3 -3 -3 -3 -3 -2
G -3 -3 -2 -3 -3 6 -2 0 -2 0 0 -2 -2 -1 -2 -2
P -3 -3 -4 -3 -3 -2 7 -1 -1 -1 -2 -2 -1 -1 -2 -1
A 0 -2 -3 -1 -1 0 -1 4 0 1 -2 -2 -1 -2 -1 -1
T -1 -2 -2 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1
S -1 -2 -3 -2 -2 0 -1 1 1 4 1 -1 0 0 -1 0
N -3 -3 -4 -3 -3 0 -2 -2 0 1 6 1 0 1 0 0
H -3 0 -2 -2 -3 -2 -2 -2 -2 -1 1 8 0 -1 0 -1
QE -3 -3 -2 -2 -3 -2 -1 -1 -1 0 0 0 4 1 0 1
D -3 -3 -4 -3 -3 -1 -1 -2 -1 0 1 -1 1 6 -2 -1
R -3 -2 -3 -2 -3 -2 -2 -1 -1 -1 0 0 0 -2 5 2
K -3 -3 -3 -2 -2 -2 -1 -1 -1 0 0 -1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.344811, K+ = 0.145128, (K- = 0.102802, C = 0.122752, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 62
# Entropy = 0.6758, Expected = -0.5115
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -2 -2 -1 -1 -1 -1 -3 -3 0 -1 -1 -3 -3 -3 -4 -3 -3 -3
FY -2 5 5 1 0 0 -1 -1 -3 -3 -2 -2 -2 -3 0 -2 -3 -3 -2 -3
W -2 1 2 11 -1 -2 -3 -3 -2 -4 -3 -2 -3 -4 -2 -2 -3 -4 -3 -3
ML -1 0 -1 -2 3 4 1 1 -3 -3 -1 -1 -2 -3 -2 -2 -3 -3 -2 -2
IV -1 0 -1 -3 1 1 3 3 -3 -3 -1 0 -2 -3 -3 -2 -3 -3 -3 -2
G -3 -3 -3 -2 -3 -4 -4 -3 6 -2 0 -2 0 0 -2 -2 -2 -1 -2 -2
P -3 -4 -3 -4 -2 -3 -3 -2 -2 7 -1 -1 -1 -2 -2 -1 -1 -1 -2 -1
A 0 -2 -2 -3 -1 -1 -1 0 0 -1 4 0 1 -2 -2 -1 -1 -2 -1 -1
T -1 -2 -2 -2 -1 -1 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1 -1
S -1 -2 -2 -3 -1 -2 -2 -2 0 -1 1 1 4 1 -1 0 0 0 -1 0
N -3 -3 -2 -4 -2 -3 -3 -3 0 -2 -2 0 1 6 1 0 0 1 0 0
H -3 -1 2 -2 -2 -3 -3 -3 -2 -2 -2 -2 -1 1 8 0 0 -1 0 -1
QE -3 -3 -2 -2 -1 -3 -3 -2 -2 -1 -1 -1 0 0 0 4 4 1 0 1
D -3 -3 -3 -4 -3 -4 -3 -3 -1 -1 -2 -1 0 1 -1 0 2 6 -2 -1
R -3 -3 -2 -3 -1 -2 -3 -3 -2 -2 -1 -1 -1 0 0 1 0 -2 5 2
K -3 -3 -2 -3 -1 -2 -3 -2 -2 -1 -1 -1 0 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.332621, K+ = 0.142693, (K- = 0.102317, C = 0.121388, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 62
# Entropy = 0.6979, Expected = -0.5209
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -2 -2 -1 -1 -1 -1 -3 -3 0 -1 -1 -3 -3 -3 -4 -3 -3 -3
F -2 6 3 1 0 0 0 -1 -3 -4 -2 -2 -2 -3 -1 -3 -3 -3 -3 -3
Y -2 3 7 2 -1 -1 -1 -1 -3 -3 -2 -2 -2 -2 2 -1 -2 -3 -2 -2
W -2 1 2 11 -1 -2 -3 -3 -2 -4 -3 -2 -3 -4 -2 -2 -3 -4 -3 -3
M -1 0 -1 -1 5 2 1 1 -3 -2 -1 -1 -1 -2 -2 0 -2 -3 -1 -1
L -1 0 -1 -2 2 4 2 1 -4 -3 -1 -1 -2 -3 -3 -2 -3 -4 -2 -2
I -1 0 -1 -3 1 2 4 3 -4 -3 -1 -1 -2 -3 -3 -3 -3 -3 -3 -3
V -1 -1 -1 -3 1 1 3 4 -3 -2 0 0 -2 -3 -3 -2 -2 -3 -3 -2
G -3 -3 -3 -2 -3 -4 -4 -3 6 -2 0 -2 0 0 -2 -2 -2 -1 -2 -2
P -3 -4 -3 -4 -2 -3 -3 -2 -2 7 -1 -1 -1 -2 -2 -1 -1 -1 -2 -1
A 0 -2 -2 -3 -1 -1 -1 0 0 -1 4 0 1 -2 -2 -1 -1 -2 -1 -1
T -1 -2 -2 -2 -1 -1 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1 -1
S -1 -2 -2 -3 -1 -2 -2 -2 0 -1 1 1 4 1 -1 0 0 0 -1 0
N -3 -3 -2 -4 -2 -3 -3 -3 0 -2 -2 0 1 6 1 0 0 1 0 0
H -3 -1 2 -2 -2 -3 -3 -3 -2 -2 -2 -2 -1 1 8 0 0 -1 0 -1
Q -3 -3 -1 -2 0 -2 -3 -2 -2 -1 -1 -1 0 0 0 5 2 0 1 1
E -4 -3 -2 -3 -2 -3 -3 -2 -2 -1 -1 -1 0 0 0 2 5 2 0 1
D -3 -3 -3 -4 -3 -4 -3 -3 -1 -1 -2 -1 0 1 -1 0 2 6 -2 -1
R -3 -3 -2 -3 -1 -2 -3 -3 -2 -2 -1 -1 -1 0 0 1 0 -2 5 2
K -3 -3 -2 -3 -1 -2 -3 -2 -2 -1 -1 -1 0 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.320733, K+ = 0.139042, (K- = 0.100891, C = 0.118949, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/7 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 30
# Entropy = 0.0876, Expected = -0.0729
CFYW MLIV G P ATS NH QED RK
CFYW 9 0 -4 -5 -3 -3 -3 -2
MLIV 0 4 -3 -4 -1 -2 -3 -2
G -4 -3 12 -1 -1 -1 -2 -2
P -5 -4 -1 16 -1 -2 0 0
ATS -3 -1 -1 -1 3 -1 0 -1
NH -3 -2 -1 -2 -1 10 0 -2
QED -3 -3 -2 0 0 0 5 1
RK -2 -2 -2 0 -1 -2 1 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.105990, K+ = 0.039394, (K- = 0.035432, C = 0.037378, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/7 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 30
# Entropy = 0.0934, Expected = -0.0782
C FY W ML IV G P A T S N H QE D R K
CFYW 10 8 11 1 -1 -4 -5 -4 -3 -2 -3 -4 -3 -5 -1 -2
MLIV -2 1 -3 3 5 -3 -4 0 1 -2 -2 -2 -3 -3 -3 -2
G -5 -4 2 -3 -3 12 -1 -1 -2 1 0 -4 -3 -1 -3 -1
P -5 -5 -4 -4 -4 -1 16 -1 0 -2 -4 1 1 -1 -2 1
ATS -3 -3 -6 -1 0 -1 -1 3 4 3 0 -2 -1 0 -2 0
NH -3 -3 -8 -1 -2 -1 -2 -1 0 0 8 13 -1 0 -2 -1
QED -1 -4 -3 -2 -4 -2 0 0 -1 -1 0 -1 5 6 0 1
RK -4 -1 -2 -2 -3 -2 0 -1 -2 0 -1 -2 2 -1 8 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.100125, K+ = 0.038638, (K- = 0.034957, C = 0.036766, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/7 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 30
# Entropy = 0.0947, Expected = -0.0796
C F Y W M L I V G P A T S N H Q E D R K
CFYW 10 8 7 11 -2 2 -1 0 -4 -5 -4 -3 -2 -3 -4 -3 -3 -5 -1 -2
MLIV -2 1 1 -3 3 3 5 4 -3 -4 0 1 -2 -2 -2 -3 -3 -3 -3 -2
G -5 -4 -5 2 -2 -3 -2 -4 12 -1 -1 -2 1 0 -4 -3 -3 -1 -3 -1
P -5 -6 -3 -4 -6 -4 -4 -5 -1 16 -1 0 -2 -4 1 0 1 -1 -2 1
ATS -3 -2 -4 -6 -1 -1 -1 0 -1 -1 3 4 3 0 -2 0 -1 0 -2 0
NH -3 -3 -3 -8 1 -2 -1 -3 -1 -2 -1 0 0 8 13 -1 0 0 -2 -1
QED -1 -6 -2 -3 -2 -2 -4 -4 -2 0 0 -1 -1 0 -1 4 5 6 0 1
RK -4 -1 -1 -2 1 -3 -3 -2 -2 0 -1 -2 0 -1 -2 2 1 -1 8 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.105601, K+ = 0.041470, (K- = 0.037314, C = 0.039355, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/5 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 30
# Entropy = 0.1328, Expected = -0.0995
C FY W ML IV G P A T S N H QE D R K
C 17 -4 -2 -1 -2 -4 -3 -3 -2 -2 -1 -5 0 -3 -2 -3
FY -4 7 3 2 0 -3 -3 -3 -2 -1 -2 -2 -3 -3 0 -1
W -2 3 20 -2 -3 1 -3 -5 -5 -3 -7 -5 -1 -4 0 -2
ML -1 2 -2 3 1 -2 -3 -1 0 -2 -1 -1 -1 -1 -2 -1
IV -2 0 -3 1 5 -2 -3 0 1 -1 -1 -3 -3 -3 -2 -2
G -4 -3 1 -2 -2 8 -1 0 -2 0 0 -3 -2 -1 -2 -1
P -3 -3 -3 -3 -3 -1 11 -1 0 -1 -3 1 0 -1 -1 1
A -3 -3 -5 -1 0 0 -1 4 1 1 0 -2 0 0 -1 0
T -2 -2 -5 0 1 -2 0 1 5 2 1 -2 -1 -1 -3 -1
S -2 -1 -3 -2 -1 0 -1 1 2 4 0 -1 -1 0 -1 0
N -1 -2 -7 -1 -1 0 -3 0 1 0 8 -1 -1 1 -2 0
H -5 -2 -5 -1 -3 -3 1 -2 -2 -1 -1 14 0 -2 -1 -2
QE 0 -3 -1 -1 -3 -2 0 0 -1 -1 -1 0 5 0 1 2
D -3 -3 -4 -1 -3 -1 -1 0 -1 0 1 -2 0 9 -1 0
R -2 0 0 -2 -2 -2 -1 -1 -3 -1 -2 -1 1 -1 8 1
K -3 -1 -2 -1 -2 -1 1 0 -1 0 0 -2 2 0 1 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.147161, K+ = 0.045797, (K- = 0.039530, C = 0.042587, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/5 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 30
# Entropy = 0.1355, Expected = -0.1024
C F Y W M L I V G P A T S N H Q E D R K
C 17 -3 -6 -2 -2 0 -2 -2 -4 -3 -3 -2 -2 -1 -5 -2 1 -3 -2 -3
FY -4 8 7 3 -1 2 0 1 -3 -3 -3 -2 -1 -2 -2 -2 -3 -3 0 -1
W -2 1 5 20 -3 -2 -3 -3 1 -3 -5 -5 -3 -7 -5 -1 -1 -4 0 -2
ML -1 1 2 -2 3 3 2 1 -2 -3 -1 0 -2 -1 -1 -1 -1 -1 -2 -1
IV -2 1 0 -3 1 2 5 4 -2 -3 0 1 -1 -1 -3 -2 -3 -3 -2 -2
G -4 -3 -3 1 -2 -2 -1 -3 8 -1 0 -2 0 0 -3 -2 -2 -1 -2 -1
P -3 -4 -2 -3 -4 -3 -3 -4 -1 11 -1 0 -1 -3 1 0 1 -1 -1 1
A -3 -2 -4 -5 1 -1 0 1 0 -1 4 1 1 0 -2 1 0 0 -1 0
T -2 -2 -1 -5 0 0 0 1 -2 0 1 5 2 1 -2 0 -2 -1 -3 -1
S -2 -1 -2 -3 -2 -2 -1 -1 0 -1 1 2 4 0 -1 -1 0 0 -1 0
N -1 -1 -4 -7 0 -2 0 -2 0 -3 0 1 0 8 -1 -1 -1 1 -2 0
H -5 -3 0 -5 2 -1 -2 -3 -3 1 -2 -2 -1 -1 14 0 0 -2 -1 -2
QE 0 -4 -2 -1 -1 -1 -3 -3 -2 0 0 -1 -1 -1 0 5 5 0 1 2
D -3 -5 -1 -4 -3 -1 -4 -2 -1 -1 0 -1 0 1 -2 -1 1 9 -1 0
R -2 -1 0 0 0 -2 -3 -1 -2 -1 -1 -3 -1 -2 -1 3 -1 -1 8 1
K -3 -1 -1 -2 2 -2 -2 -2 -1 1 0 -1 0 0 -2 0 2 0 1 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.140835, K+ = 0.043400, (K- = 0.037699, C = 0.040483, delta = 1) |
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# Rectangular BLOSUM Scoring Matrix 20x20 in 1/5 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 30
# Entropy = 0.1424, Expected = -0.1074
C F Y W M L I V G P A T S N H Q E D R K
C 17 -3 -6 -2 -2 0 -2 -2 -4 -3 -3 -2 -2 -1 -5 -2 1 -3 -2 -3
F -3 10 3 1 -2 2 0 1 -3 -4 -2 -2 -1 -1 -3 -3 -4 -5 -1 -1
Y -6 3 9 5 -1 3 -1 1 -3 -2 -4 -1 -2 -4 0 -1 -2 -1 0 -1
W -2 1 5 20 -3 -2 -3 -3 1 -3 -5 -5 -3 -7 -5 -1 -1 -4 0 -2
M -2 -2 -1 -3 6 2 1 0 -2 -4 1 0 -2 0 2 -1 -1 -3 0 2
L 0 2 3 -2 2 4 2 1 -2 -3 -1 0 -2 -2 -1 -2 -1 -1 -2 -2
I -2 0 -1 -3 1 2 6 4 -1 -3 0 0 -1 0 -2 -2 -3 -4 -3 -2
V -2 1 1 -3 0 1 4 5 -3 -4 1 1 -1 -2 -3 -3 -3 -2 -1 -2
G -4 -3 -3 1 -2 -2 -1 -3 8 -1 0 -2 0 0 -3 -2 -2 -1 -2 -1
P -3 -4 -2 -3 -4 -3 -3 -4 -1 11 -1 0 -1 -3 1 0 1 -1 -1 1
A -3 -2 -4 -5 1 -1 0 1 0 -1 4 1 1 0 -2 1 0 0 -1 0
T -2 -2 -1 -5 0 0 0 1 -2 0 1 5 2 1 -2 0 -2 -1 -3 -1
S -2 -1 -2 -3 -2 -2 -1 -1 0 -1 1 2 4 0 -1 -1 0 0 -1 0
N -1 -1 -4 -7 0 -2 0 -2 0 -3 0 1 0 8 -1 -1 -1 1 -2 0
H -5 -3 0 -5 2 -1 -2 -3 -3 1 -2 -2 -1 -1 14 0 0 -2 -1 -2
Q -2 -3 -1 -1 -1 -2 -2 -3 -2 0 1 0 -1 -1 0 8 2 -1 3 0
E 1 -4 -2 -1 -1 -1 -3 -3 -2 1 0 -2 0 -1 0 2 6 1 -1 2
D -3 -5 -1 -4 -3 -1 -4 -2 -1 -1 0 -1 0 1 -2 -1 1 9 -1 0
R -2 -1 0 0 0 -2 -3 -1 -2 -1 -1 -3 -1 -2 -1 3 -1 -1 8 1
K -3 -1 -1 -2 2 -2 -2 -2 -1 1 0 -1 0 0 -2 0 2 0 1 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.139976, K+ = 0.044395, (K- = 0.038596, C = 0.041428, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/5 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 35
# Entropy = 0.1441, Expected = -0.1173
CFYW MLIV G P ATS NH QED RK
CFYW 7 0 -3 -5 -2 -2 -3 -2
MLIV 0 4 -3 -3 -1 -2 -3 -2
G -3 -3 9 -2 0 0 -2 -2
P -5 -3 -2 13 -2 -2 -1 -1
ATS -2 -1 0 -2 3 -1 -1 -1
NH -2 -2 0 -2 -1 8 0 -1
QED -3 -3 -2 -1 -1 0 5 0
RK -2 -2 -2 -1 -1 -1 0 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.148248, K+ = 0.058742, (K- = 0.050648, C = 0.054595, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/5 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 35
# Entropy = 0.1499, Expected = -0.1222
C FY W ML IV G P A T S N H QE D R K
CFYW 9 6 7 0 -1 -3 -5 -2 -2 -2 -2 -3 -2 -4 -1 -2
MLIV -3 1 -1 4 4 -3 -3 -1 0 -2 -2 -2 -2 -3 -2 -2
G -4 -3 -1 -3 -4 9 -2 0 -3 1 1 -2 -3 -2 -3 -1
P -5 -4 -5 -4 -2 -2 13 -2 0 -2 -2 -1 0 -1 -3 0
ATS -2 -2 -2 -1 -1 0 -2 3 3 3 0 -2 -1 -1 -1 0
NH -3 -2 -4 -2 -3 0 -2 -1 -1 0 6 10 -1 1 -1 -1
QED -3 -3 -2 -2 -3 -2 -1 -1 -1 0 0 -1 4 6 0 1
RK -3 -1 0 -2 -2 -2 -1 -1 -1 0 0 -2 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.136600, K+ = 0.051596, (K- = 0.045008, C = 0.048227, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/5 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 35
# Entropy = 0.1513, Expected = -0.1238
C F Y W M L I V G P A T S N H Q E D R K
CFYW 9 6 5 7 -1 1 -1 -1 -3 -5 -2 -2 -2 -2 -3 -3 -2 -4 -1 -2
MLIV -3 1 0 -1 3 4 4 4 -3 -3 -1 0 -2 -2 -2 -3 -2 -3 -2 -2
G -4 -4 -2 -1 -2 -4 -4 -4 9 -2 0 -3 1 1 -2 -2 -3 -2 -3 -1
P -5 -5 -3 -5 -4 -4 -2 -3 -2 13 -2 0 -2 -2 -1 0 0 -1 -3 0
ATS -2 -2 -2 -2 -1 -2 -1 0 0 -2 3 3 3 0 -2 0 -1 -1 -1 0
NH -3 -2 -2 -4 0 -3 -2 -4 0 -2 -1 -1 0 6 10 0 -1 1 -1 -1
QED -3 -4 -2 -2 -3 -2 -4 -3 -2 -1 -1 -1 0 0 -1 4 5 6 0 1
RK -3 -1 -1 0 0 -2 -3 -2 -2 -1 -1 -1 0 0 -2 1 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.139594, K+ = 0.054549, (K- = 0.047442, C = 0.050913, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 35
# Entropy = 0.2024, Expected = -0.1483
C FY W ML IV G P A T S N H QE D R K
C 15 -4 -5 -2 -3 -3 -4 -2 -1 -3 -1 -4 -2 -3 -3 -2
FY -4 6 2 1 0 -2 -4 -2 -1 -1 -2 -1 -2 -3 -1 -1
W -5 2 16 0 -2 -1 -4 -2 -2 -2 -2 -4 -1 -3 0 0
ML -2 1 0 4 2 -3 -3 -1 0 -2 -2 -1 -2 -2 -1 -2
IV -3 0 -2 2 4 -3 -2 0 0 -1 -2 -3 -2 -3 -2 -2
G -3 -2 -1 -3 -3 7 -2 0 -2 1 1 -2 -2 -2 -2 -1
P -4 -4 -4 -3 -2 -2 10 -2 0 -2 -2 -1 0 -1 -2 0
A -2 -2 -2 -1 0 0 -2 5 0 1 -1 -2 -1 -1 -1 0
T -1 -1 -2 0 0 -2 0 0 5 2 0 -2 -1 -1 -2 0
S -3 -1 -2 -2 -1 1 -2 1 2 4 0 -1 0 -1 -1 0
N -1 -2 -2 -2 -2 1 -2 -1 0 0 7 1 0 1 -1 0
H -4 -1 -4 -1 -3 -2 -1 -2 -2 -1 1 12 -1 0 -1 -2
QE -2 -2 -1 -2 -2 -2 0 -1 -1 0 0 -1 5 1 0 1
D -3 -3 -3 -2 -3 -2 -1 -1 -1 -1 1 0 1 8 -1 -1
R -3 -1 0 -1 -2 -2 -2 -1 -2 -1 -1 -1 0 -1 8 2
K -2 -1 0 -2 -2 -1 0 0 0 0 0 -2 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.180540, K+ = 0.062138, (K- = 0.051874, C = 0.056851, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 35
# Entropy = 0.2045, Expected = -0.1506
C F Y W M L I V G P A T S N H Q E D R K
C 15 -4 -5 -5 -4 -2 -4 -2 -3 -4 -2 -1 -3 -1 -4 -3 -1 -3 -3 -2
FY -4 7 6 2 0 1 0 0 -2 -4 -2 -1 -1 -2 -1 -2 -2 -3 -1 -1
W -5 1 3 16 1 0 -1 -2 -1 -4 -2 -2 -2 -2 -4 -1 -1 -3 0 0
ML -2 1 0 0 3 4 2 1 -3 -3 -1 0 -2 -2 -1 -2 -1 -2 -1 -2
IV -3 1 0 -2 1 2 5 4 -3 -2 0 0 -1 -2 -3 -3 -2 -3 -2 -2
G -3 -3 -2 -1 -1 -3 -3 -3 7 -2 0 -2 1 1 -2 -2 -2 -2 -2 -1
P -4 -4 -3 -4 -3 -3 -1 -3 -2 10 -2 0 -2 -2 -1 0 0 -1 -2 0
A -2 -2 -1 -2 0 -2 -1 0 0 -2 5 0 1 -1 -2 0 -1 -1 -1 0
T -1 -1 -2 -2 0 0 -1 1 -2 0 0 5 2 0 -2 0 -1 -1 -2 0
S -3 -1 -1 -2 -1 -2 -2 -1 1 -2 1 2 4 0 -1 0 0 -1 -1 0
N -1 -1 -2 -2 -1 -2 -1 -2 1 -2 -1 0 0 7 1 1 -1 1 -1 0
H -4 -3 0 -4 1 -2 -3 -4 -2 -1 -2 -2 -1 1 12 -1 -1 0 -1 -2
QE -2 -3 -1 -1 -2 -2 -3 -2 -2 0 -1 -1 0 0 -1 4 5 1 0 1
D -3 -3 -2 -3 -3 -2 -3 -2 -2 -1 -1 -1 -1 1 0 -1 2 8 -1 -1
R -3 -1 0 0 0 -2 -3 -1 -2 -2 -1 -2 -1 -1 -1 2 -1 -1 8 2
K -2 -1 -1 0 0 -2 -2 -2 -1 0 0 0 0 0 -2 0 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.179658, K+ = 0.062698, (K- = 0.052387, C = 0.057388, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 35
# Entropy = 0.2111, Expected = -0.1550
C F Y W M L I V G P A T S N H Q E D R K
C 15 -4 -5 -5 -4 -2 -4 -2 -3 -4 -2 -1 -3 -1 -4 -3 -1 -3 -3 -2
F -4 8 3 1 0 2 1 1 -3 -4 -2 -1 -1 -1 -3 -4 -3 -3 -1 -1
Y -5 3 8 3 0 0 0 0 -2 -3 -1 -2 -1 -2 0 0 -1 -2 0 -1
W -5 1 3 16 1 0 -1 -2 -1 -4 -2 -2 -2 -2 -4 -1 -1 -3 0 0
M -4 0 0 1 6 3 1 1 -1 -3 0 0 -1 -1 1 -1 -2 -3 0 0
L -2 2 0 0 3 5 2 2 -3 -3 -2 0 -2 -2 -2 -2 -1 -2 -2 -2
I -4 1 0 -1 1 2 5 4 -3 -1 -1 -1 -2 -1 -3 -2 -3 -3 -3 -2
V -2 1 0 -2 1 2 4 5 -3 -3 0 1 -1 -2 -4 -3 -2 -2 -1 -2
G -3 -3 -2 -1 -1 -3 -3 -3 7 -2 0 -2 1 1 -2 -2 -2 -2 -2 -1
P -4 -4 -3 -4 -3 -3 -1 -3 -2 10 -2 0 -2 -2 -1 0 0 -1 -2 0
A -2 -2 -1 -2 0 -2 -1 0 0 -2 5 0 1 -1 -2 0 -1 -1 -1 0
T -1 -1 -2 -2 0 0 -1 1 -2 0 0 5 2 0 -2 0 -1 -1 -2 0
S -3 -1 -1 -2 -1 -2 -2 -1 1 -2 1 2 4 0 -1 0 0 -1 -1 0
N -1 -1 -2 -2 -1 -2 -1 -2 1 -2 -1 0 0 7 1 1 -1 1 -1 0
H -4 -3 0 -4 1 -2 -3 -4 -2 -1 -2 -2 -1 1 12 -1 -1 0 -1 -2
Q -3 -4 0 -1 -1 -2 -2 -3 -2 0 0 0 0 1 -1 7 2 -1 2 0
E -1 -3 -1 -1 -2 -1 -3 -2 -2 0 -1 -1 0 -1 -1 2 6 2 -1 1
D -3 -3 -2 -3 -3 -2 -3 -2 -2 -1 -1 -1 -1 1 0 -1 2 8 -1 -1
R -3 -1 0 0 0 -2 -3 -1 -2 -2 -1 -2 -1 -1 -1 2 -1 -1 8 2
K -2 -1 -1 0 0 -2 -2 -2 -1 0 0 0 0 0 -2 0 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.172967, K+ = 0.060388, (K- = 0.050796, C = 0.055454, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 40
# Entropy = 0.2055, Expected = -0.1671
CFYW MLIV G P ATS NH QED RK
CFYW 6 0 -3 -4 -2 -2 -3 -2
MLIV 0 4 -4 -3 -1 -3 -3 -2
G -3 -4 8 -1 0 -1 -2 -2
P -4 -3 -1 11 -1 -2 -1 -2
ATS -2 -1 0 -1 3 -1 -1 -1
NH -2 -3 -1 -2 -1 7 0 0
QED -3 -3 -2 -1 -1 0 5 0
RK -2 -2 -2 -2 -1 0 0 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.173810, K+ = 0.073105, (K- = 0.061441, C = 0.067104, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 40
# Entropy = 0.2112, Expected = -0.1725
C FY W ML IV G P A T S N H QE D R K
CFYW 7 6 8 0 -1 -3 -4 -2 -2 -2 -3 -1 -3 -3 -2 -2
MLIV -3 0 -2 4 4 -4 -3 -1 0 -2 -3 -2 -3 -3 -2 -2
G -3 -3 -2 -4 -4 8 -1 1 -2 0 0 -2 -2 -2 -3 -2
P -5 -4 -4 -3 -3 -1 11 -2 0 -1 -2 -2 -1 -2 -3 -1
ATS -1 -2 -4 -2 -1 0 -1 3 3 3 0 -2 0 -1 -1 -1
NH -3 -1 -4 -2 -3 -1 -2 -1 -1 0 6 8 0 1 0 0
QED -3 -3 -3 -2 -3 -2 -1 -1 -1 0 1 0 4 5 0 1
RK -3 -2 -2 -2 -3 -2 -2 -1 -1 -1 0 -1 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.170683, K+ = 0.072600, (K- = 0.061208, C = 0.066742, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 40
# Entropy = 0.2129, Expected = -0.1744
C F Y W M L I V G P A T S N H Q E D R K
CFYW 7 6 5 8 0 0 -1 -1 -3 -4 -2 -2 -2 -3 -1 -3 -3 -3 -2 -2
MLIV -3 1 0 -2 3 4 4 3 -4 -3 -1 0 -2 -3 -2 -2 -3 -3 -2 -2
G -3 -3 -3 -2 -2 -4 -4 -4 8 -1 1 -2 0 0 -2 -2 -3 -2 -3 -2
P -5 -4 -3 -4 -2 -4 -2 -3 -1 11 -2 0 -1 -2 -2 -2 0 -2 -3 -1
ATS -1 -2 -2 -4 -1 -2 -1 0 0 -1 3 3 3 0 -2 0 -1 -1 -1 -1
NH -3 -2 0 -4 -1 -3 -3 -3 -1 -2 -1 -1 0 6 8 1 0 1 0 0
QED -3 -4 -2 -3 -2 -2 -4 -3 -2 -1 -1 -1 0 1 0 3 5 5 0 1
RK -3 -2 -1 -2 -1 -2 -3 -2 -2 -2 -1 -1 -1 0 -1 1 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.173318, K+ = 0.072606, (K- = 0.061052, C = 0.066662, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 40
# Entropy = 0.2736, Expected = -0.2014
C FY W ML IV G P A T S N H QE D R K
C 16 -3 -6 -2 -3 -3 -5 -2 -1 -1 -2 -4 -3 -2 -3 -3
FY -3 7 2 1 0 -3 -4 -2 -1 -2 -3 0 -3 -3 -2 -2
W -6 2 19 -1 -3 -2 -4 -3 -4 -5 -4 -5 -2 -5 -2 -2
ML -2 1 -1 5 2 -4 -3 -2 -1 -2 -3 -1 -2 -3 -2 -2
IV -3 0 -3 2 5 -4 -3 0 0 -2 -3 -4 -3 -3 -3 -2
G -3 -3 -2 -4 -4 8 -1 1 -2 0 0 -2 -2 -2 -3 -2
P -5 -4 -4 -3 -3 -1 11 -2 0 -1 -2 -2 -1 -2 -3 -1
A -2 -2 -3 -2 0 1 -2 5 0 1 -1 -2 -1 -1 -2 -1
T -1 -1 -4 -1 0 -2 0 0 6 2 0 -2 -1 -1 -2 0
S -1 -2 -5 -2 -2 0 -1 1 2 5 1 -1 0 0 -1 0
N -2 -3 -4 -3 -3 0 -2 -1 0 1 8 1 0 2 0 0
H -4 0 -5 -1 -4 -2 -2 -2 -2 -1 1 13 0 0 0 -1
QE -3 -3 -2 -2 -3 -2 -1 -1 -1 0 0 0 5 1 0 1
D -2 -3 -5 -3 -3 -2 -2 -1 -1 0 2 0 1 9 -1 0
R -3 -2 -2 -2 -3 -3 -3 -2 -2 -1 0 0 0 -1 9 3
K -3 -2 -2 -2 -2 -2 -1 -1 0 0 0 -1 1 0 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.175359, K+ = 0.074769, (K- = 0.062743, C = 0.068580, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 40
# Entropy = 0.2759, Expected = -0.2039
C F Y W M L I V G P A T S N H Q E D R K
C 16 -2 -4 -6 -3 -2 -4 -2 -3 -5 -2 -1 -1 -2 -4 -4 -2 -2 -3 -3
FY -3 7 7 2 0 1 0 0 -3 -4 -2 -1 -2 -3 0 -3 -3 -3 -2 -2
W -6 1 3 19 -2 -1 -3 -3 -2 -4 -3 -4 -5 -4 -5 -1 -2 -5 -2 -2
ML -2 1 0 -1 4 5 2 2 -4 -3 -2 -1 -2 -3 -1 -2 -2 -3 -2 -2
IV -3 0 -1 -3 1 2 5 5 -4 -3 0 0 -2 -3 -4 -3 -3 -3 -3 -2
G -3 -3 -3 -2 -2 -4 -4 -4 8 -1 1 -2 0 0 -2 -2 -3 -2 -3 -2
P -5 -4 -3 -4 -2 -4 -2 -3 -1 11 -2 0 -1 -2 -2 -2 0 -2 -3 -1
A -2 -3 -2 -3 -1 -2 -1 0 1 -2 5 0 1 -1 -2 0 -1 -1 -2 -1
T -1 -1 -1 -4 -1 -1 -1 1 -2 0 0 6 2 0 -2 -1 -1 -1 -2 0
S -1 -2 -2 -5 -2 -3 -2 -1 0 -1 1 2 5 1 -1 1 0 0 -1 0
N -2 -3 -2 -4 -2 -3 -2 -3 0 -2 -1 0 1 8 1 1 -1 2 0 0
H -4 -2 2 -5 1 -2 -3 -4 -2 -2 -2 -2 -1 1 13 0 0 0 0 -1
QE -3 -4 -2 -2 -2 -2 -4 -3 -2 -1 -1 -1 0 0 0 5 6 1 0 1
D -2 -4 -3 -5 -3 -3 -4 -3 -2 -2 -1 -1 0 2 0 -1 2 9 -1 0
R -3 -2 -1 -2 -1 -2 -3 -2 -3 -3 -2 -2 -1 0 0 2 -1 -1 9 3
K -3 -3 -1 -2 -1 -2 -3 -2 -2 -1 -1 0 0 0 -1 1 1 0 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.175542, K+ = 0.076087, (K- = 0.063837, C = 0.069783, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 40
# Entropy = 0.2851, Expected = -0.2090
C F Y W M L I V G P A T S N H Q E D R K
C 16 -2 -4 -6 -3 -2 -4 -2 -3 -5 -2 -1 -1 -2 -4 -4 -2 -2 -3 -3
F -2 9 4 1 0 2 1 0 -3 -4 -3 -1 -2 -3 -2 -4 -3 -4 -2 -3
Y -4 4 9 3 1 0 0 -1 -3 -3 -2 -1 -2 -2 2 -1 -2 -3 -1 -1
W -6 1 3 19 -2 -1 -3 -3 -2 -4 -3 -4 -5 -4 -5 -1 -2 -5 -2 -2
M -3 0 1 -2 7 3 1 1 -2 -2 -1 -1 -2 -2 1 -1 -2 -3 -1 -1
L -2 2 0 -1 3 6 2 2 -4 -4 -2 -1 -3 -3 -2 -2 -2 -3 -2 -2
I -4 1 0 -3 1 2 6 4 -4 -2 -1 -1 -2 -2 -3 -3 -4 -4 -3 -3
V -2 0 -1 -3 1 2 4 5 -4 -3 0 1 -1 -3 -4 -3 -3 -3 -2 -2
G -3 -3 -3 -2 -2 -4 -4 -4 8 -1 1 -2 0 0 -2 -2 -3 -2 -3 -2
P -5 -4 -3 -4 -2 -4 -2 -3 -1 11 -2 0 -1 -2 -2 -2 0 -2 -3 -1
A -2 -3 -2 -3 -1 -2 -1 0 1 -2 5 0 1 -1 -2 0 -1 -1 -2 -1
T -1 -1 -1 -4 -1 -1 -1 1 -2 0 0 6 2 0 -2 -1 -1 -1 -2 0
S -1 -2 -2 -5 -2 -3 -2 -1 0 -1 1 2 5 1 -1 1 0 0 -1 0
N -2 -3 -2 -4 -2 -3 -2 -3 0 -2 -1 0 1 8 1 1 -1 2 0 0
H -4 -2 2 -5 1 -2 -3 -4 -2 -2 -2 -2 -1 1 13 0 0 0 0 -1
Q -4 -4 -1 -1 -1 -2 -3 -3 -2 -2 0 -1 1 1 0 8 2 -1 2 1
E -2 -3 -2 -2 -2 -2 -4 -3 -3 0 -1 -1 0 -1 0 2 7 2 -1 1
D -2 -4 -3 -5 -3 -3 -4 -3 -2 -2 -1 -1 0 2 0 -1 2 9 -1 0
R -3 -2 -1 -2 -1 -2 -3 -2 -3 -3 -2 -2 -1 0 0 2 -1 -1 9 3
K -3 -3 -1 -2 -1 -2 -3 -2 -2 -1 -1 0 0 0 -1 1 1 0 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.172169, K+ = 0.074645, (K- = 0.062839, C = 0.068573, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 45
# Entropy = 0.2834, Expected = -0.2309
CFYW MLIV G P ATS NH QED RK
CFYW 7 -1 -4 -4 -2 -2 -4 -3
MLIV -1 4 -4 -4 -1 -3 -4 -3
G -4 -4 9 -2 0 -1 -2 -3
P -4 -4 -2 13 -2 -3 -1 -2
ATS -2 -1 0 -2 3 -1 -1 -1
NH -2 -3 -1 -3 -1 7 1 0
QED -4 -4 -2 -1 -1 1 5 1
RK -3 -3 -3 -2 -1 0 1 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.177838, K+ = 0.090384, (K- = 0.075659, C = 0.082803, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 45
# Entropy = 0.2893, Expected = -0.2370
C FY W ML IV G P A T S N H QE D R K
CFYW 8 6 9 0 -1 -4 -4 -3 -2 -2 -3 -1 -3 -4 -3 -3
MLIV -3 0 -3 4 4 -4 -4 -1 -1 -3 -4 -3 -3 -4 -3 -3
G -3 -4 -3 -4 -5 9 -2 0 -2 0 0 -2 -3 -2 -3 -2
P -5 -4 -4 -4 -3 -2 13 -2 -1 -2 -3 -2 -1 -2 -3 -1
ATS -1 -2 -4 -2 -1 0 -2 4 3 3 0 -2 -1 -1 -2 -1
NH -3 -2 -5 -3 -4 -1 -3 -2 0 0 7 8 0 2 0 0
QED -4 -3 -4 -3 -4 -2 -1 -1 -1 0 1 0 5 6 0 1
RK -4 -3 -3 -3 -3 -3 -2 -2 -1 -1 0 0 1 -1 7 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.173899, K+ = 0.090700, (K- = 0.076223, C = 0.083252, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/4 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 45
# Entropy = 0.2912, Expected = -0.2392
C F Y W M L I V G P A T S N H Q E D R K
CFYW 8 7 6 9 -1 0 -1 -1 -4 -4 -3 -2 -2 -3 -1 -3 -4 -4 -3 -3
MLIV -3 1 -1 -3 3 4 4 4 -4 -4 -1 -1 -3 -4 -3 -3 -3 -4 -3 -3
G -3 -4 -3 -3 -3 -5 -5 -4 9 -2 0 -2 0 0 -2 -2 -3 -2 -3 -2
P -5 -5 -4 -4 -3 -4 -3 -4 -2 13 -2 -1 -2 -3 -2 -2 -1 -2 -3 -1
ATS -1 -3 -2 -4 -1 -2 -2 0 0 -2 4 3 3 0 -2 -1 -1 -1 -2 -1
NH -3 -3 0 -5 -2 -3 -4 -4 -1 -3 -2 0 0 7 8 0 0 2 0 0
QED -4 -4 -2 -4 -2 -3 -4 -4 -2 -1 -1 -1 0 1 0 4 5 6 0 1
RK -4 -3 -2 -3 -2 -3 -4 -3 -3 -2 -2 -1 -1 0 0 2 1 -1 7 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.173261, K+ = 0.090815, (K- = 0.076368, C = 0.083383, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 45
# Entropy = 0.3649, Expected = -0.2701
C FY W ML IV G P A T S N H QE D R K
C 12 -3 -5 -2 -2 -3 -4 -1 -1 -1 -2 -3 -3 -3 -3 -3
FY -3 6 2 1 0 -3 -3 -2 -1 -2 -2 0 -2 -3 -2 -2
W -5 2 15 -2 -3 -2 -3 -2 -3 -4 -4 -3 -2 -4 -2 -2
ML -2 1 -2 4 2 -3 -3 -1 -1 -2 -3 -1 -2 -3 -2 -2
IV -2 0 -3 2 4 -3 -2 -1 0 -2 -3 -3 -3 -3 -3 -2
G -3 -3 -2 -3 -3 7 -2 0 -2 0 0 -2 -2 -1 -2 -2
P -4 -3 -3 -3 -2 -2 9 -1 -1 -1 -2 -2 -1 -1 -2 -1
A -1 -2 -2 -1 -1 0 -1 5 0 1 -1 -2 -1 -2 -2 -1
T -1 -1 -3 -1 0 -2 -1 0 5 2 0 -2 -1 -1 -1 -1
S -1 -2 -4 -2 -2 0 -1 1 2 4 1 -1 0 0 -1 -1
N -2 -2 -4 -3 -3 0 -2 -1 0 1 6 1 0 2 0 0
H -3 0 -3 -1 -3 -2 -2 -2 -2 -1 1 10 0 0 0 -1
QE -3 -2 -2 -2 -3 -2 -1 -1 -1 0 0 0 5 1 1 1
D -3 -3 -4 -3 -3 -1 -1 -2 -1 0 2 0 1 7 -1 0
R -3 -2 -2 -2 -3 -2 -2 -2 -1 -1 0 0 1 -1 7 3
K -3 -2 -2 -2 -2 -2 -1 -1 -1 -1 0 -1 1 0 3 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.225693, K+ = 0.091818, (K- = 0.073267, C = 0.082194, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 45
# Entropy = 0.3673, Expected = -0.2728
C F Y W M L I V G P A T S N H Q E D R K
C 12 -2 -3 -5 -2 -2 -3 -1 -3 -4 -1 -1 -1 -2 -3 -3 -3 -3 -3 -3
FY -3 6 6 2 0 1 0 0 -3 -3 -2 -1 -2 -2 0 -2 -3 -3 -2 -2
W -5 1 3 15 -2 -2 -2 -3 -2 -3 -2 -3 -4 -4 -3 -2 -3 -4 -2 -2
ML -2 1 0 -2 3 4 2 1 -3 -3 -1 -1 -2 -3 -1 -2 -2 -3 -2 -2
IV -2 0 -1 -3 1 2 4 4 -3 -2 -1 0 -2 -3 -3 -2 -3 -3 -3 -2
G -3 -3 -3 -2 -2 -3 -4 -3 7 -2 0 -2 0 0 -2 -2 -2 -1 -2 -2
P -4 -3 -3 -3 -2 -3 -2 -3 -2 9 -1 -1 -1 -2 -2 -1 0 -1 -2 -1
A -1 -2 -2 -2 -1 -1 -1 0 0 -1 5 0 1 -1 -2 -1 -1 -2 -2 -1
T -1 -1 -1 -3 -1 -1 -1 0 -2 -1 0 5 2 0 -2 -1 -1 -1 -1 -1
S -1 -2 -2 -4 -2 -3 -2 -1 0 -1 1 2 4 1 -1 0 0 0 -1 -1
N -2 -2 -2 -4 -2 -3 -2 -3 0 -2 -1 0 1 6 1 0 0 2 0 0
H -3 -2 2 -3 0 -2 -3 -3 -2 -2 -2 -2 -1 1 10 1 0 0 0 -1
QE -3 -3 -2 -2 -1 -2 -3 -3 -2 -1 -1 -1 0 0 0 4 5 1 1 1
D -3 -4 -2 -4 -3 -3 -4 -3 -1 -1 -2 -1 0 2 0 0 2 7 -1 0
R -3 -2 -1 -2 -1 -2 -3 -2 -2 -2 -2 -1 -1 0 0 1 0 -1 7 3
K -3 -3 -1 -2 -1 -3 -3 -2 -2 -1 -1 -1 -1 0 -1 1 1 0 3 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.234716, K+ = 0.096068, (K- = 0.075970, C = 0.085627, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 45
# Entropy = 0.3795, Expected = -0.2789
C F Y W M L I V G P A T S N H Q E D R K
C 12 -2 -3 -5 -2 -2 -3 -1 -3 -4 -1 -1 -1 -2 -3 -3 -3 -3 -3 -3
F -2 8 3 1 0 1 0 0 -3 -3 -2 -1 -2 -2 -2 -4 -3 -4 -2 -3
Y -3 3 8 3 0 0 0 -1 -3 -3 -2 -1 -2 -2 2 -1 -2 -2 -1 -1
W -5 1 3 15 -2 -2 -2 -3 -2 -3 -2 -3 -4 -4 -3 -2 -3 -4 -2 -2
M -2 0 0 -2 6 2 2 1 -2 -2 -1 -1 -2 -2 0 0 -2 -3 -1 -1
L -2 1 0 -2 2 5 2 1 -3 -3 -1 -1 -3 -3 -2 -2 -2 -3 -2 -3
I -3 0 0 -2 2 2 5 3 -4 -2 -1 -1 -2 -2 -3 -2 -3 -4 -3 -3
V -1 0 -1 -3 1 1 3 5 -3 -3 0 0 -1 -3 -3 -3 -3 -3 -2 -2
G -3 -3 -3 -2 -2 -3 -4 -3 7 -2 0 -2 0 0 -2 -2 -2 -1 -2 -2
P -4 -3 -3 -3 -2 -3 -2 -3 -2 9 -1 -1 -1 -2 -2 -1 0 -1 -2 -1
A -1 -2 -2 -2 -1 -1 -1 0 0 -1 5 0 1 -1 -2 -1 -1 -2 -2 -1
T -1 -1 -1 -3 -1 -1 -1 0 -2 -1 0 5 2 0 -2 -1 -1 -1 -1 -1
S -1 -2 -2 -4 -2 -3 -2 -1 0 -1 1 2 4 1 -1 0 0 0 -1 -1
N -2 -2 -2 -4 -2 -3 -2 -3 0 -2 -1 0 1 6 1 0 0 2 0 0
H -3 -2 2 -3 0 -2 -3 -3 -2 -2 -2 -2 -1 1 10 1 0 0 0 -1
Q -3 -4 -1 -2 0 -2 -2 -3 -2 -1 -1 -1 0 0 1 6 2 0 1 1
E -3 -3 -2 -3 -2 -2 -3 -3 -2 0 -1 -1 0 0 0 2 6 2 0 1
D -3 -4 -2 -4 -3 -3 -4 -3 -1 -1 -2 -1 0 2 0 0 2 7 -1 0
R -3 -2 -1 -2 -1 -2 -3 -2 -2 -2 -2 -1 -1 0 0 1 0 -1 7 3
K -3 -3 -1 -2 -1 -3 -3 -2 -2 -1 -1 -1 -1 0 -1 1 1 0 3 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.231019, K+ = 0.095168, (K- = 0.075537, C = 0.084975, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 50
# Entropy = 0.3661, Expected = -0.3003
CFYW MLIV G P ATS NH QED RK
CFYW 6 -1 -3 -4 -2 -2 -3 -3
MLIV -1 3 -4 -3 -1 -3 -3 -3
G -3 -4 8 -2 0 -1 -2 -2
P -4 -3 -2 10 -1 -2 -1 -2
ATS -2 -1 0 -1 3 -1 -1 -1
NH -2 -3 -1 -2 -1 6 0 0
QED -3 -3 -2 -1 -1 0 4 0
RK -3 -3 -2 -2 -1 0 0 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.240539, K+ = 0.113125, (K- = 0.088939, C = 0.100548, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 50
# Entropy = 0.3728, Expected = -0.3079
C FY W ML IV G P A T S N H QE D R K
CFYW 6 5 7 0 -1 -3 -4 -2 -2 -2 -3 0 -3 -4 -3 -3
MLIV -2 0 -2 3 3 -4 -3 -1 -1 -2 -3 -3 -3 -4 -3 -3
G -3 -4 -3 -4 -4 8 -2 0 -2 0 0 -2 -2 -1 -3 -2
P -4 -4 -4 -3 -3 -2 10 -1 -1 -1 -2 -2 -1 -1 -3 -1
ATS -1 -2 -3 -2 -1 0 -1 3 3 3 0 -2 -1 -1 -1 -1
NH -2 -1 -4 -3 -4 -1 -2 -2 0 0 6 7 0 1 0 0
QED -3 -3 -3 -3 -3 -2 -1 -1 -1 0 1 0 4 5 0 1
RK -4 -3 -3 -3 -3 -2 -2 -1 -1 -1 0 0 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.230413, K+ = 0.109992, (K- = 0.087356, C = 0.098240, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 50
# Entropy = 0.3754, Expected = -0.3111
C F Y W M L I V G P A T S N H Q E D R K
CFYW 6 6 5 7 0 0 -1 -1 -3 -4 -2 -2 -2 -3 0 -3 -3 -4 -3 -3
MLIV -2 0 -1 -2 3 3 4 3 -4 -3 -1 -1 -2 -3 -3 -2 -3 -4 -3 -3
G -3 -4 -3 -3 -3 -4 -4 -4 8 -2 0 -2 0 0 -2 -2 -3 -1 -3 -2
P -4 -4 -3 -4 -3 -4 -3 -3 -2 10 -1 -1 -1 -2 -2 -1 -1 -1 -3 -1
ATS -1 -3 -2 -3 -1 -2 -2 0 0 -1 3 3 3 0 -2 0 -1 -1 -1 -1
NH -2 -3 0 -4 -2 -3 -4 -4 -1 -2 -2 0 0 6 7 0 0 1 0 0
QED -3 -4 -2 -3 -2 -3 -4 -3 -2 -1 -1 -1 0 1 0 3 4 5 0 1
RK -4 -3 -2 -3 -2 -3 -3 -3 -2 -2 -1 -1 -1 0 0 1 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.220620, K+ = 0.105734, (K- = 0.084801, C = 0.094883, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 50
# Entropy = 0.4627, Expected = -0.3464
C FY W ML IV G P A T S N H QE D R K
C 13 -3 -5 -2 -2 -3 -4 -1 -1 -1 -2 -3 -3 -4 -4 -3
FY -3 7 2 0 -1 -4 -4 -2 -2 -2 -3 0 -3 -4 -2 -3
W -5 2 15 -2 -3 -3 -4 -3 -3 -4 -4 -3 -2 -5 -3 -3
ML -2 0 -2 5 2 -4 -3 -2 -1 -3 -3 -2 -3 -4 -2 -3
IV -2 -1 -3 2 4 -4 -3 -1 0 -2 -3 -4 -3 -4 -3 -3
G -3 -4 -3 -4 -4 8 -2 0 -2 0 0 -2 -2 -1 -3 -2
P -4 -4 -4 -3 -3 -2 10 -1 -1 -1 -2 -2 -1 -1 -3 -1
A -1 -2 -3 -2 -1 0 -1 5 0 1 -1 -2 -1 -2 -2 -1
T -1 -2 -3 -1 0 -2 -1 0 5 2 0 -2 -1 -1 -1 -1
S -1 -2 -4 -3 -2 0 -1 1 2 5 1 -1 0 0 -1 0
N -2 -3 -4 -3 -3 0 -2 -1 0 1 7 1 0 2 -1 0
H -3 0 -3 -2 -4 -2 -2 -2 -2 -1 1 10 0 -1 0 0
QE -3 -3 -2 -3 -3 -2 -1 -1 -1 0 0 0 5 1 0 1
D -4 -4 -5 -4 -4 -1 -1 -2 -1 0 2 -1 1 8 -2 -1
R -4 -2 -3 -2 -3 -3 -3 -2 -1 -1 -1 0 0 -2 7 3
K -3 -3 -3 -3 -3 -2 -1 -1 -1 0 0 0 1 -1 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.231574, K+ = 0.113428, (K- = 0.089980, C = 0.101252, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 50
# Entropy = 0.4659, Expected = -0.3500
C F Y W M L I V G P A T S N H Q E D R K
C 13 -2 -3 -5 -2 -2 -2 -1 -3 -4 -1 -1 -1 -2 -3 -3 -3 -4 -4 -3
FY -3 7 6 2 0 0 0 -1 -4 -4 -2 -2 -2 -3 0 -3 -3 -4 -2 -3
W -5 1 2 15 -1 -2 -3 -3 -3 -4 -3 -3 -4 -4 -3 -1 -3 -5 -3 -3
ML -2 1 -1 -2 4 5 2 1 -4 -3 -2 -1 -3 -3 -2 -2 -3 -4 -2 -3
IV -2 0 -1 -3 1 2 4 4 -4 -3 -1 0 -2 -3 -4 -3 -3 -4 -3 -3
G -3 -4 -3 -3 -3 -4 -4 -4 8 -2 0 -2 0 0 -2 -2 -3 -1 -3 -2
P -4 -4 -3 -4 -3 -4 -3 -3 -2 10 -1 -1 -1 -2 -2 -1 -1 -1 -3 -1
A -1 -3 -2 -3 -1 -2 -1 0 0 -1 5 0 1 -1 -2 -1 -1 -2 -2 -1
T -1 -2 -2 -3 -1 -1 -1 0 -2 -1 0 5 2 0 -2 -1 -1 -1 -1 -1
S -1 -3 -2 -4 -2 -3 -3 -2 0 -1 1 2 5 1 -1 0 -1 0 -1 0
N -2 -4 -2 -4 -2 -4 -3 -3 0 -2 -1 0 1 7 1 0 0 2 -1 0
H -3 -1 2 -3 -1 -3 -4 -4 -2 -2 -2 -2 -1 1 10 1 0 -1 0 0
QE -3 -4 -2 -2 -1 -3 -3 -3 -2 -1 -1 -1 0 0 0 4 5 1 0 1
D -4 -5 -3 -5 -4 -4 -4 -4 -1 -1 -2 -1 0 2 -1 0 2 8 -2 -1
R -4 -3 -1 -3 -2 -3 -4 -3 -3 -3 -2 -1 -1 -1 0 1 0 -2 7 3
K -3 -4 -2 -3 -2 -3 -3 -3 -2 -1 -1 -1 0 0 0 2 1 -1 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.236622, K+ = 0.115256, (K- = 0.090970, C = 0.102635, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 50
# Entropy = 0.4808, Expected = -0.3573
C F Y W M L I V G P A T S N H Q E D R K
C 13 -2 -3 -5 -2 -2 -2 -1 -3 -4 -1 -1 -1 -2 -3 -3 -3 -4 -4 -3
F -2 8 4 1 0 1 0 -1 -4 -4 -3 -2 -3 -4 -1 -4 -3 -5 -3 -4
Y -3 4 8 2 0 -1 -1 -1 -3 -3 -2 -2 -2 -2 2 -1 -2 -3 -1 -2
W -5 1 2 15 -1 -2 -3 -3 -3 -4 -3 -3 -4 -4 -3 -1 -3 -5 -3 -3
M -2 0 0 -1 7 3 2 1 -3 -3 -1 -1 -2 -2 -1 0 -2 -4 -2 -2
L -2 1 -1 -2 3 5 2 1 -4 -4 -2 -1 -3 -4 -3 -2 -3 -4 -3 -3
I -2 0 -1 -3 2 2 5 4 -4 -3 -1 -1 -3 -3 -4 -3 -4 -4 -4 -3
V -1 -1 -1 -3 1 1 4 5 -4 -3 0 0 -2 -3 -4 -3 -3 -4 -3 -3
G -3 -4 -3 -3 -3 -4 -4 -4 8 -2 0 -2 0 0 -2 -2 -3 -1 -3 -2
P -4 -4 -3 -4 -3 -4 -3 -3 -2 10 -1 -1 -1 -2 -2 -1 -1 -1 -3 -1
A -1 -3 -2 -3 -1 -2 -1 0 0 -1 5 0 1 -1 -2 -1 -1 -2 -2 -1
T -1 -2 -2 -3 -1 -1 -1 0 -2 -1 0 5 2 0 -2 -1 -1 -1 -1 -1
S -1 -3 -2 -4 -2 -3 -3 -2 0 -1 1 2 5 1 -1 0 -1 0 -1 0
N -2 -4 -2 -4 -2 -4 -3 -3 0 -2 -1 0 1 7 1 0 0 2 -1 0
H -3 -1 2 -3 -1 -3 -4 -4 -2 -2 -2 -2 -1 1 10 1 0 -1 0 0
Q -3 -4 -1 -1 0 -2 -3 -3 -2 -1 -1 -1 0 0 1 7 2 0 1 2
E -3 -3 -2 -3 -2 -3 -4 -3 -3 -1 -1 -1 -1 0 0 2 6 2 0 1
D -4 -5 -3 -5 -4 -4 -4 -4 -1 -1 -2 -1 0 2 -1 0 2 8 -2 -1
R -4 -3 -1 -3 -2 -3 -4 -3 -3 -3 -2 -1 -1 -1 0 1 0 -2 7 3
K -3 -4 -2 -3 -2 -3 -3 -3 -2 -1 -1 -1 0 0 0 2 1 -1 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.235397, K+ = 0.116191, (K- = 0.091820, C = 0.103528, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 55
# Entropy = 0.4307, Expected = -0.3539
CFYW MLIV G P ATS NH QED RK
CFYW 6 -1 -4 -4 -2 -2 -4 -3
MLIV -1 3 -4 -3 -2 -4 -4 -3
G -4 -4 8 -3 0 -1 -2 -2
P -4 -3 -3 10 -1 -2 -1 -2
ATS -2 -2 0 -1 3 -1 -1 -1
NH -2 -4 -1 -2 -1 7 0 0
QED -4 -4 -2 -1 -1 0 5 0
RK -3 -3 -2 -2 -1 0 0 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.251124, K+ = 0.136304, (K- = 0.106034, C = 0.120536, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 55
# Entropy = 0.4379, Expected = -0.3624
C FY W ML IV G P A T S N H QE D R K
CFYW 6 6 7 0 -1 -4 -4 -2 -2 -2 -3 -1 -3 -4 -3 -3
MLIV -2 0 -3 3 3 -4 -3 -1 -1 -3 -4 -4 -3 -4 -3 -3
G -3 -4 -3 -4 -4 8 -3 0 -2 0 0 -2 -3 -2 -3 -2
P -3 -4 -5 -4 -3 -3 10 -1 -1 -1 -2 -3 -1 -2 -3 -1
ATS -1 -2 -4 -2 -1 0 -1 3 3 3 0 -2 -1 -1 -1 -1
NH -3 -2 -4 -4 -4 -1 -2 -2 0 0 6 7 0 1 0 0
QED -4 -4 -4 -3 -4 -2 -1 -1 -1 0 1 0 4 5 0 1
RK -4 -3 -4 -3 -3 -2 -2 -2 -1 -1 0 0 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.237855, K+ = 0.122611, (K- = 0.096657, C = 0.109120, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 55
# Entropy = 0.4404, Expected = -0.3658
C F Y W M L I V G P A T S N H Q E D R K
CFYW 6 6 6 7 -1 0 -1 -1 -4 -4 -2 -2 -2 -3 -1 -3 -3 -4 -3 -3
MLIV -2 0 -1 -3 3 4 4 3 -4 -3 -1 -1 -3 -4 -4 -3 -4 -4 -3 -3
G -3 -4 -4 -3 -3 -5 -5 -4 8 -3 0 -2 0 0 -2 -2 -3 -2 -3 -2
P -3 -5 -4 -5 -3 -4 -3 -3 -3 10 -1 -1 -1 -2 -3 -1 -1 -2 -3 -1
ATS -1 -3 -2 -4 -1 -2 -2 -1 0 -1 3 3 3 0 -2 -1 -1 -1 -1 -1
NH -3 -3 0 -4 -2 -4 -4 -4 -1 -2 -2 0 0 6 7 0 0 1 0 0
QED -4 -4 -2 -4 -2 -4 -4 -3 -2 -1 -1 -1 0 1 0 4 5 5 0 1
RK -4 -4 -2 -4 -2 -3 -4 -3 -2 -2 -2 -1 -1 0 0 2 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.219866, K+ = 0.117450, (K- = 0.094269, C = 0.105435, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 55
# Entropy = 0.5430, Expected = -0.4061
C FY W ML IV G P A T S N H QE D R K
C 13 -3 -4 -2 -1 -3 -3 0 -1 -1 -3 -4 -4 -4 -4 -4
FY -3 7 2 0 -1 -4 -4 -2 -2 -3 -3 0 -3 -4 -3 -3
W -4 2 15 -2 -4 -3 -5 -4 -3 -4 -5 -3 -3 -5 -3 -4
ML -2 0 -2 5 2 -4 -4 -2 -1 -3 -4 -3 -3 -4 -3 -3
IV -1 -1 -4 2 5 -4 -3 -1 0 -2 -4 -4 -3 -4 -3 -3
G -3 -4 -3 -4 -4 8 -3 0 -2 0 0 -2 -3 -2 -3 -2
P -3 -4 -5 -4 -3 -3 10 -1 -1 -1 -2 -3 -1 -2 -3 -1
A 0 -2 -4 -2 -1 0 -1 5 0 2 -2 -2 -1 -2 -2 -1
T -1 -2 -3 -1 0 -2 -1 0 6 2 0 -2 -1 -1 -1 -1
S -1 -3 -4 -3 -2 0 -1 2 2 5 1 -1 0 0 -1 0
N -3 -3 -5 -4 -4 0 -2 -2 0 1 8 1 0 2 -1 0
H -4 0 -3 -3 -4 -2 -3 -2 -2 -1 1 11 0 -1 0 0
QE -4 -3 -3 -3 -3 -3 -1 -1 -1 0 0 0 5 1 1 1
D -4 -4 -5 -4 -4 -2 -2 -2 -1 0 2 -1 1 8 -2 -1
R -4 -3 -3 -3 -3 -3 -3 -2 -1 -1 -1 0 1 -2 8 3
K -4 -3 -4 -3 -3 -2 -1 -1 -1 0 0 0 1 -1 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.222738, K+ = 0.117052, (K- = 0.093680, C = 0.104932, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 55
# Entropy = 0.5461, Expected = -0.4099
C F Y W M L I V G P A T S N H Q E D R K
C 13 -3 -3 -4 -2 -2 -2 -1 -3 -3 0 -1 -1 -3 -4 -4 -4 -4 -4 -4
FY -3 7 7 2 0 0 -1 -1 -4 -4 -2 -2 -3 -3 0 -3 -3 -4 -3 -3
W -4 2 3 15 -2 -3 -3 -4 -3 -5 -4 -3 -4 -5 -3 -2 -3 -5 -3 -4
ML -2 1 -1 -2 4 5 2 1 -4 -4 -2 -1 -3 -4 -3 -2 -3 -4 -3 -3
IV -1 -1 -1 -4 1 2 5 5 -4 -3 -1 0 -2 -4 -4 -3 -4 -4 -3 -3
G -3 -4 -4 -3 -3 -5 -5 -4 8 -3 0 -2 0 0 -2 -2 -3 -2 -3 -2
P -3 -5 -4 -5 -3 -4 -3 -3 -3 10 -1 -1 -1 -2 -3 -1 -1 -2 -3 -1
A 0 -3 -2 -4 -1 -2 -2 0 0 -1 5 0 2 -2 -2 -1 -1 -2 -2 -1
T -1 -3 -2 -3 -1 -2 -1 0 -2 -1 0 6 2 0 -2 -1 -1 -1 -1 -1
S -1 -3 -2 -4 -2 -3 -3 -2 0 -1 2 2 5 1 -1 0 0 0 -1 0
N -3 -4 -2 -5 -3 -4 -4 -4 0 -2 -2 0 1 8 1 0 0 2 -1 0
H -4 -1 2 -3 -2 -3 -4 -4 -2 -3 -2 -2 -1 1 11 1 -1 -1 0 0
QE -4 -4 -2 -3 -2 -3 -4 -3 -3 -1 -1 -1 0 0 0 5 6 1 1 1
D -4 -5 -3 -5 -4 -5 -4 -4 -2 -2 -2 -1 0 2 -1 0 2 8 -2 -1
R -4 -3 -2 -3 -2 -3 -4 -3 -3 -3 -2 -1 -1 -1 0 1 0 -2 8 3
K -4 -4 -2 -4 -2 -3 -4 -3 -2 -1 -1 -1 0 0 0 2 1 -1 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.225471, K+ = 0.120766, (K- = 0.096389, C = 0.108120, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 55
# Entropy = 0.5637, Expected = -0.4179
C F Y W M L I V G P A T S N H Q E D R K
C 13 -3 -3 -4 -2 -2 -2 -1 -3 -3 0 -1 -1 -3 -4 -4 -4 -4 -4 -4
F -3 9 4 2 0 1 0 -1 -4 -5 -3 -3 -3 -4 -1 -4 -4 -5 -3 -4
Y -3 4 9 3 -1 -1 -1 -2 -4 -4 -2 -2 -2 -2 2 -1 -2 -3 -2 -2
W -4 2 3 15 -2 -3 -3 -4 -3 -5 -4 -3 -4 -5 -3 -2 -3 -5 -3 -4
M -2 0 -1 -2 8 3 2 1 -3 -3 -1 -1 -2 -3 -2 0 -3 -4 -2 -2
L -2 1 -1 -3 3 6 2 1 -5 -4 -2 -2 -3 -4 -3 -3 -4 -5 -3 -3
I -2 0 -1 -3 2 2 6 4 -5 -3 -2 -1 -3 -4 -4 -4 -4 -4 -4 -4
V -1 -1 -2 -4 1 1 4 5 -4 -3 0 0 -2 -4 -4 -3 -3 -4 -3 -3
G -3 -4 -4 -3 -3 -5 -5 -4 8 -3 0 -2 0 0 -2 -2 -3 -2 -3 -2
P -3 -5 -4 -5 -3 -4 -3 -3 -3 10 -1 -1 -1 -2 -3 -1 -1 -2 -3 -1
A 0 -3 -2 -4 -1 -2 -2 0 0 -1 5 0 2 -2 -2 -1 -1 -2 -2 -1
T -1 -3 -2 -3 -1 -2 -1 0 -2 -1 0 6 2 0 -2 -1 -1 -1 -1 -1
S -1 -3 -2 -4 -2 -3 -3 -2 0 -1 2 2 5 1 -1 0 0 0 -1 0
N -3 -4 -2 -5 -3 -4 -4 -4 0 -2 -2 0 1 8 1 0 0 2 -1 0
H -4 -1 2 -3 -2 -3 -4 -4 -2 -3 -2 -2 -1 1 11 1 -1 -1 0 0
Q -4 -4 -1 -2 0 -3 -4 -3 -2 -1 -1 -1 0 0 1 7 2 0 1 2
E -4 -4 -2 -3 -3 -4 -4 -3 -3 -1 -1 -1 0 0 -1 2 7 2 0 1
D -4 -5 -3 -5 -4 -5 -4 -4 -2 -2 -2 -1 0 2 -1 0 2 8 -2 -1
R -4 -3 -2 -3 -2 -3 -4 -3 -3 -3 -2 -1 -1 -1 0 1 0 -2 8 3
K -4 -4 -2 -4 -2 -3 -4 -3 -2 -1 -1 -1 0 0 0 2 1 -1 3 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.226432, K+ = 0.122685, (K- = 0.097826, C = 0.109787, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 60
# Entropy = 0.5056, Expected = -0.4186
CFYW MLIV G P ATS NH QED RK
CFYW 6 -1 -4 -5 -2 -2 -4 -4
MLIV -1 4 -5 -4 -2 -4 -4 -3
G -4 -5 8 -3 -1 -1 -2 -3
P -5 -4 -3 11 -1 -3 -2 -2
ATS -2 -2 -1 -1 3 -1 -1 -1
NH -2 -4 -1 -3 -1 7 0 0
QED -4 -4 -2 -2 -1 0 5 0
RK -4 -3 -3 -2 -1 0 0 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.227661, K+ = 0.135320, (K- = 0.107768, C = 0.121022, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 60
# Entropy = 0.5135, Expected = -0.4287
C FY W ML IV G P A T S N H QE D R K
CFYW 6 6 7 -1 -1 -4 -5 -2 -2 -3 -4 -1 -4 -5 -4 -4
MLIV -2 -1 -3 4 4 -5 -4 -1 -1 -3 -4 -4 -4 -5 -3 -3
G -4 -4 -3 -5 -5 8 -3 0 -2 0 0 -3 -3 -2 -3 -2
P -4 -5 -5 -4 -4 -3 11 -1 -2 -1 -3 -3 -2 -2 -3 -1
ATS -1 -3 -4 -2 -1 -1 -1 4 3 3 0 -2 -1 -1 -2 -1
NH -4 -2 -5 -4 -4 -1 -3 -2 -1 0 7 7 0 1 0 0
QED -5 -4 -4 -4 -4 -2 -2 -2 -1 0 1 0 5 5 0 1
RK -5 -3 -4 -3 -4 -3 -2 -2 -1 -1 0 0 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.222902, K+ = 0.135177, (K- = 0.108167, C = 0.121171, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 60
# Entropy = 0.5162, Expected = -0.4324
C F Y W M L I V G P A T S N H Q E D R K
CFYW 6 6 6 7 -1 -1 -1 -2 -4 -5 -2 -2 -3 -4 -1 -3 -4 -5 -4 -4
MLIV -2 0 -2 -3 3 4 4 3 -5 -4 -1 -1 -3 -4 -4 -3 -4 -5 -3 -3
G -4 -5 -4 -3 -4 -5 -5 -5 8 -3 0 -2 0 0 -3 -3 -3 -2 -3 -2
P -4 -5 -4 -5 -4 -4 -4 -3 -3 11 -1 -2 -1 -3 -3 -2 -2 -2 -3 -1
ATS -1 -3 -2 -4 -1 -2 -2 -1 -1 -1 4 3 3 0 -2 -1 -1 -1 -2 -1
NH -4 -3 0 -5 -3 -4 -4 -4 -1 -3 -2 -1 0 7 7 0 0 1 0 0
QED -5 -5 -3 -4 -3 -4 -4 -4 -2 -2 -2 -1 0 1 0 4 5 5 0 1
RK -5 -4 -2 -4 -2 -3 -4 -3 -3 -2 -2 -1 -1 0 0 2 1 -1 6 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.231043, K+ = 0.137542, (K- = 0.109168, C = 0.122809, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 60
# Entropy = 0.6356, Expected = -0.4783
C FY W ML IV G P A T S N H QE D R K
C 13 -3 -3 -2 -2 -4 -4 0 -1 -1 -4 -4 -5 -5 -5 -5
FY -3 7 2 0 -1 -4 -5 -3 -3 -3 -4 0 -4 -5 -3 -4
W -3 2 16 -2 -4 -3 -5 -4 -4 -4 -5 -3 -3 -6 -4 -4
ML -2 0 -2 5 2 -5 -4 -2 -2 -3 -4 -3 -3 -5 -3 -3
IV -2 -1 -4 2 5 -5 -4 -1 0 -3 -4 -5 -4 -4 -4 -4
G -4 -4 -3 -5 -5 8 -3 0 -2 0 0 -3 -3 -2 -3 -2
P -4 -5 -5 -4 -4 -3 11 -1 -2 -1 -3 -3 -2 -2 -3 -1
A 0 -3 -4 -2 -1 0 -1 6 0 2 -2 -2 -1 -3 -2 -1
T -1 -3 -4 -2 0 -2 -2 0 7 2 0 -2 -1 -1 -2 -1
S -1 -3 -4 -3 -3 0 -1 2 2 6 1 -1 0 0 -1 0
N -4 -4 -5 -4 -4 0 -3 -2 0 1 8 1 0 2 -1 0
H -4 0 -3 -3 -5 -3 -3 -2 -2 -1 1 11 0 -1 0 -1
QE -5 -4 -3 -3 -4 -3 -2 -1 -1 0 0 0 6 2 1 2
D -5 -5 -6 -5 -4 -2 -2 -3 -1 0 2 -1 2 9 -2 -1
R -5 -3 -4 -3 -4 -3 -3 -2 -2 -1 -1 0 1 -2 8 3
K -5 -4 -4 -3 -4 -2 -1 -1 -1 0 0 -1 2 -1 3 7
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.221131, K+ = 0.131481, (K- = 0.105397, C = 0.117959, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 60
# Entropy = 0.6390, Expected = -0.4826
C F Y W M L I V G P A T S N H Q E D R K
C 13 -3 -4 -3 -2 -2 -2 -1 -4 -4 0 -1 -1 -4 -4 -4 -5 -5 -5 -5
FY -3 8 7 2 0 0 -1 -1 -4 -5 -3 -3 -3 -4 0 -3 -4 -5 -3 -4
W -3 1 3 16 -2 -2 -4 -4 -3 -5 -4 -4 -4 -5 -3 -3 -4 -6 -4 -4
ML -2 1 -1 -2 4 5 2 1 -5 -4 -2 -2 -3 -4 -3 -2 -4 -5 -3 -3
IV -2 -1 -2 -4 1 2 5 5 -5 -4 -1 0 -3 -4 -5 -4 -4 -4 -4 -4
G -4 -5 -4 -3 -4 -5 -5 -5 8 -3 0 -2 0 0 -3 -3 -3 -2 -3 -2
P -4 -5 -4 -5 -4 -4 -4 -3 -3 11 -1 -2 -1 -3 -3 -2 -2 -2 -3 -1
A 0 -3 -2 -4 -1 -2 -2 0 0 -1 6 0 2 -2 -2 -1 -1 -3 -2 -1
T -1 -3 -2 -4 -1 -2 -1 0 -2 -2 0 7 2 0 -2 -1 -1 -1 -2 -1
S -1 -3 -3 -4 -2 -4 -3 -2 0 -1 2 2 6 1 -1 0 0 0 -1 0
N -4 -4 -3 -5 -3 -5 -4 -4 0 -3 -2 0 1 8 1 0 0 2 -1 0
H -4 -2 2 -3 -2 -4 -5 -5 -3 -3 -2 -2 -1 1 11 1 0 -1 0 -1
QE -5 -5 -3 -3 -2 -4 -4 -3 -3 -2 -1 -1 0 0 0 5 6 2 1 2
D -5 -5 -4 -6 -5 -5 -4 -5 -2 -2 -3 -1 0 2 -1 0 2 9 -2 -1
R -5 -4 -2 -4 -2 -3 -4 -4 -3 -3 -2 -2 -1 -1 0 1 0 -2 8 3
K -5 -4 -3 -4 -2 -4 -4 -3 -2 -1 -1 -1 0 0 -1 2 1 -1 3 7
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.223766, K+ = 0.132667, (K- = 0.106068, C = 0.118872, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 60
# Entropy = 0.6603, Expected = -0.4917
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -2 -2 -1 -1 -1 -1 -2 -3 0 -1 -1 -2 -3 -3 -3 -3 -3 -3
F -2 6 3 1 0 0 0 -1 -3 -4 -2 -2 -2 -3 -1 -3 -3 -3 -3 -3
Y -2 3 6 2 -1 -1 -1 -1 -3 -3 -2 -2 -2 -2 2 -1 -2 -3 -2 -2
W -2 1 2 10 -1 -2 -2 -3 -2 -4 -3 -2 -3 -4 -2 -2 -3 -4 -3 -3
M -1 0 -1 -1 5 2 1 1 -2 -2 -1 -1 -1 -2 -1 0 -2 -3 -1 -1
L -1 0 -1 -2 2 4 2 1 -4 -3 -1 -1 -2 -3 -3 -2 -3 -3 -2 -2
I -1 0 -1 -2 1 2 4 3 -3 -3 -1 -1 -2 -3 -3 -3 -3 -3 -3 -3
V -1 -1 -1 -3 1 1 3 4 -3 -2 0 0 -2 -3 -3 -2 -2 -3 -2 -2
G -2 -3 -3 -2 -2 -4 -3 -3 6 -2 0 -2 0 0 -2 -2 -2 -1 -2 -1
P -3 -4 -3 -4 -2 -3 -3 -2 -2 7 -1 -1 -1 -2 -2 -1 -1 -1 -2 -1
A 0 -2 -2 -3 -1 -1 -1 0 0 -1 4 0 1 -1 -2 -1 -1 -2 -1 -1
T -1 -2 -2 -2 -1 -1 -1 0 -2 -1 0 4 1 0 -2 -1 -1 -1 -1 -1
S -1 -2 -2 -3 -1 -2 -2 -2 0 -1 1 1 4 1 -1 0 0 0 -1 0
N -2 -3 -2 -4 -2 -3 -3 -3 0 -2 -1 0 1 6 1 0 0 1 0 0
H -3 -1 2 -2 -1 -3 -3 -3 -2 -2 -2 -2 -1 1 7 1 0 -1 0 -1
Q -3 -3 -1 -2 0 -2 -3 -2 -2 -1 -1 -1 0 0 1 5 2 0 1 1
E -3 -3 -2 -3 -2 -3 -3 -2 -2 -1 -1 -1 0 0 0 2 5 2 0 1
D -3 -3 -3 -4 -3 -3 -3 -3 -1 -1 -2 -1 0 1 -1 0 2 6 -1 -1
R -3 -3 -2 -3 -1 -2 -3 -2 -2 -2 -1 -1 -1 0 0 1 0 -1 5 2
K -3 -3 -2 -3 -1 -2 -3 -2 -1 -1 -1 -1 0 0 -1 1 1 -1 2 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.325171, K+ = 0.136490, (K- = 0.098601, C = 0.116521, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 65
# Entropy = 0.5796, Expected = -0.4853
CFYW MLIV G P ATS NH QED RK
CFYW 6 -1 -5 -5 -3 -3 -5 -4
MLIV -1 4 -5 -4 -2 -5 -4 -4
G -5 -5 9 -3 -1 -2 -3 -3
P -5 -4 -3 11 -1 -3 -2 -2
ATS -3 -2 -1 -1 4 -1 -1 -1
NH -3 -5 -2 -3 -1 7 0 -1
QED -5 -4 -3 -2 -1 0 5 0
RK -4 -4 -3 -2 -1 -1 0 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.229273, K+ = 0.150939, (K- = 0.120014, C = 0.134886, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 65
# Entropy = 0.5882, Expected = -0.4968
C FY W ML IV G P A T S N H QE D R K
CFYW 7 6 7 -1 -2 -5 -5 -3 -3 -3 -4 -1 -4 -5 -4 -4
MLIV -2 -1 -3 4 4 -5 -4 -2 -1 -3 -5 -5 -4 -5 -4 -4
G -4 -5 -4 -5 -5 9 -3 0 -2 -1 -1 -3 -3 -2 -4 -2
P -5 -5 -6 -4 -4 -3 11 -1 -2 -1 -3 -3 -2 -3 -3 -2
ATS -1 -3 -4 -2 -2 -1 -1 4 4 4 -1 -2 -1 -2 -2 -1
NH -5 -2 -5 -5 -5 -2 -3 -3 -1 0 7 8 0 1 -1 -1
QED -5 -4 -5 -4 -5 -3 -2 -2 -1 0 1 0 5 6 0 1
RK -5 -4 -5 -3 -4 -3 -2 -2 -1 -1 0 -1 1 -2 6 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.223113, K+ = 0.151381, (K- = 0.121109, C = 0.135682, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/3 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 65
# Entropy = 0.5909, Expected = -0.5008
C F Y W M L I V G P A T S N H Q E D R K
CFYW 7 6 6 7 -1 -1 -1 -2 -5 -5 -3 -3 -3 -4 -1 -4 -5 -5 -4 -4
MLIV -2 0 -2 -3 3 4 4 4 -5 -4 -2 -1 -3 -5 -5 -3 -4 -5 -4 -4
G -4 -5 -5 -4 -4 -6 -6 -5 9 -3 0 -2 -1 -1 -3 -3 -3 -2 -4 -2
P -5 -6 -5 -6 -4 -5 -4 -4 -3 11 -1 -2 -1 -3 -3 -2 -2 -3 -3 -2
ATS -1 -3 -3 -4 -2 -3 -2 -1 -1 -1 4 4 4 -1 -2 -1 -1 -2 -2 -1
NH -5 -3 0 -5 -3 -5 -5 -5 -2 -3 -3 -1 0 7 8 0 0 1 -1 -1
QED -5 -5 -4 -5 -3 -5 -5 -4 -3 -2 -2 -1 0 1 0 4 5 6 0 1
RK -5 -5 -3 -5 -2 -4 -4 -4 -3 -2 -2 -1 -1 0 -1 2 1 -2 6 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.225448, K+ = 0.152918, (K- = 0.122053, C = 0.136906, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 65
# Entropy = 0.7294, Expected = -0.5529
C FY W ML IV G P A T S N H QE D R K
C 9 -2 -2 -1 -1 -3 -3 0 -1 -1 -3 -3 -4 -4 -4 -3
FY -2 5 1 0 -1 -3 -3 -2 -2 -2 -3 0 -3 -3 -2 -3
W -2 1 10 -2 -3 -3 -4 -3 -3 -3 -4 -2 -3 -5 -3 -3
ML -1 0 -2 4 1 -4 -3 -1 -1 -2 -3 -3 -2 -4 -2 -2
IV -1 -1 -3 1 3 -4 -3 -1 0 -2 -3 -3 -3 -3 -3 -3
G -3 -3 -3 -4 -4 6 -2 0 -2 0 -1 -2 -2 -1 -2 -2
P -3 -3 -4 -3 -3 -2 8 -1 -1 -1 -2 -2 -1 -2 -2 -1
A 0 -2 -3 -1 -1 0 -1 4 0 1 -2 -2 -1 -2 -1 -1
T -1 -2 -3 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1
S -1 -2 -3 -2 -2 0 -1 1 1 4 1 -1 0 0 -1 0
N -3 -3 -4 -3 -3 -1 -2 -2 0 1 6 1 0 1 0 0
H -3 0 -2 -3 -3 -2 -2 -2 -2 -1 1 8 0 -1 0 -1
QE -4 -3 -3 -2 -3 -2 -1 -1 -1 0 0 0 4 1 0 1
D -4 -3 -5 -4 -3 -1 -2 -2 -1 0 1 -1 1 6 -2 -1
R -4 -2 -3 -2 -3 -2 -2 -1 -1 -1 0 0 0 -2 6 2
K -3 -3 -3 -2 -3 -2 -1 -1 -1 0 0 -1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.335025, K+ = 0.150280, (K- = 0.107499, C = 0.127697, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 65
# Entropy = 0.7329, Expected = -0.5575
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -2 -2 -2 -1 -1 -1 -3 -3 0 -1 -1 -3 -3 -3 -4 -4 -4 -3
FY -2 5 5 1 0 0 -1 -1 -3 -3 -2 -2 -2 -3 0 -2 -3 -3 -2 -3
W -2 1 2 10 -2 -2 -2 -3 -3 -4 -3 -3 -3 -4 -2 -2 -3 -5 -3 -3
ML -1 0 -1 -2 3 4 1 1 -4 -3 -1 -1 -2 -3 -3 -2 -3 -4 -2 -2
IV -1 -1 -1 -3 1 1 3 3 -4 -3 -1 0 -2 -3 -3 -3 -3 -3 -3 -3
G -3 -3 -3 -3 -3 -4 -4 -3 6 -2 0 -2 0 -1 -2 -2 -2 -1 -2 -2
P -3 -4 -3 -4 -3 -3 -3 -2 -2 8 -1 -1 -1 -2 -2 -1 -1 -2 -2 -1
A 0 -2 -2 -3 -1 -2 -1 0 0 -1 4 0 1 -2 -2 -1 -1 -2 -1 -1
T -1 -2 -2 -3 -1 -1 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1 -1
S -1 -2 -2 -3 -2 -3 -2 -2 0 -1 1 1 4 1 -1 0 0 0 -1 0
N -3 -3 -2 -4 -2 -4 -3 -3 -1 -2 -2 0 1 6 1 0 0 1 0 0
H -3 -1 2 -2 -2 -3 -3 -3 -2 -2 -2 -2 -1 1 8 1 0 -1 0 -1
QE -4 -3 -2 -3 -1 -3 -3 -2 -2 -1 -1 -1 0 0 0 4 4 1 0 1
D -4 -4 -3 -5 -3 -4 -3 -3 -1 -2 -2 -1 0 1 -1 0 2 6 -2 -1
R -4 -3 -2 -3 -2 -2 -3 -3 -2 -2 -1 -1 -1 0 0 1 0 -2 6 2
K -3 -3 -2 -3 -2 -3 -3 -2 -2 -1 -1 -1 0 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.337148, K+ = 0.151945, (K- = 0.108459, C = 0.128982, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 65
# Entropy = 0.7576, Expected = -0.5675
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -2 -2 -2 -1 -1 -1 -3 -3 0 -1 -1 -3 -3 -3 -4 -4 -4 -3
F -2 6 3 1 0 0 0 -1 -3 -4 -2 -2 -2 -3 -1 -3 -3 -4 -3 -3
Y -2 3 7 2 -1 -1 -1 -1 -3 -3 -2 -2 -2 -2 2 -2 -2 -3 -2 -2
W -2 1 2 10 -2 -2 -2 -3 -3 -4 -3 -3 -3 -4 -2 -2 -3 -5 -3 -3
M -2 0 -1 -2 6 2 1 1 -3 -3 -1 -1 -2 -2 -2 0 -2 -3 -2 -2
L -1 0 -1 -2 2 4 2 1 -4 -3 -2 -1 -3 -4 -3 -2 -3 -4 -2 -3
I -1 0 -1 -2 1 2 4 3 -4 -3 -1 -1 -2 -3 -3 -3 -3 -3 -3 -3
V -1 -1 -1 -3 1 1 3 4 -3 -2 0 0 -2 -3 -3 -2 -3 -3 -3 -2
G -3 -3 -3 -3 -3 -4 -4 -3 6 -2 0 -2 0 -1 -2 -2 -2 -1 -2 -2
P -3 -4 -3 -4 -3 -3 -3 -2 -2 8 -1 -1 -1 -2 -2 -1 -1 -2 -2 -1
A 0 -2 -2 -3 -1 -2 -1 0 0 -1 4 0 1 -2 -2 -1 -1 -2 -1 -1
T -1 -2 -2 -3 -1 -1 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1 -1
S -1 -2 -2 -3 -2 -3 -2 -2 0 -1 1 1 4 1 -1 0 0 0 -1 0
N -3 -3 -2 -4 -2 -4 -3 -3 -1 -2 -2 0 1 6 1 0 0 1 0 0
H -3 -1 2 -2 -2 -3 -3 -3 -2 -2 -2 -2 -1 1 8 1 0 -1 0 -1
Q -3 -3 -2 -2 0 -2 -3 -2 -2 -1 -1 -1 0 0 1 6 2 0 1 1
E -4 -3 -2 -3 -2 -3 -3 -3 -2 -1 -1 -1 0 0 0 2 5 2 0 1
D -4 -4 -3 -5 -3 -4 -3 -3 -1 -2 -2 -1 0 1 -1 0 2 6 -2 -1
R -4 -3 -2 -3 -2 -2 -3 -3 -2 -2 -1 -1 -1 0 0 1 0 -2 6 2
K -3 -3 -2 -3 -2 -3 -3 -2 -2 -1 -1 -1 0 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.322677, K+ = 0.146906, (K- = 0.106391, C = 0.125561, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 70
# Entropy = 0.6403, Expected = -0.5406
CFYW MLIV G P ATS NH QED RK
CFYW 4 -1 -3 -4 -2 -2 -3 -3
MLIV -1 3 -4 -3 -1 -3 -3 -3
G -3 -4 6 -3 -1 -1 -2 -2
P -4 -3 -3 8 -1 -2 -2 -2
ATS -2 -1 -1 -1 3 -1 -1 -1
NH -2 -3 -1 -2 -1 5 0 0
QED -3 -3 -2 -2 -1 0 4 0
RK -3 -3 -2 -2 -1 0 0 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.316762, K+ = 0.157539, (K- = 0.114768, C = 0.135026, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 70
# Entropy = 0.6491, Expected = -0.5528
C FY W ML IV G P A T S N H QE D R K
CFYW 5 4 5 -1 -1 -3 -4 -2 -2 -2 -3 0 -3 -4 -3 -3
MLIV -1 -1 -2 3 3 -4 -3 -1 -1 -2 -3 -3 -3 -4 -3 -3
G -3 -4 -3 -4 -4 6 -3 0 -2 -1 -1 -2 -2 -2 -3 -2
P -3 -4 -4 -3 -3 -3 8 -1 -1 -1 -2 -2 -1 -2 -2 -1
ATS -1 -2 -3 -2 -1 -1 -1 3 3 3 0 -1 -1 -1 -1 -1
NH -3 -1 -3 -3 -3 -1 -2 -2 -1 0 5 5 0 1 0 0
QED -4 -3 -4 -3 -3 -2 -2 -1 -1 0 0 0 3 4 0 0
RK -4 -3 -3 -2 -3 -2 -2 -1 -1 -1 0 0 1 -1 4 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.320583, K+ = 0.161715, (K- = 0.117361, C = 0.138355, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 70
# Entropy = 0.6523, Expected = -0.5579
C F Y W M L I V G P A T S N H Q E D R K
CFYW 5 4 4 5 -1 -1 -1 -1 -3 -4 -2 -2 -2 -3 0 -3 -3 -4 -3 -3
MLIV -1 0 -1 -2 2 3 3 2 -4 -3 -1 -1 -2 -3 -3 -2 -3 -4 -3 -3
G -3 -4 -4 -3 -3 -4 -4 -4 6 -3 0 -2 -1 -1 -2 -2 -2 -2 -3 -2
P -3 -4 -3 -4 -3 -3 -3 -3 -3 8 -1 -1 -1 -2 -2 -2 -1 -2 -2 -1
ATS -1 -2 -2 -3 -1 -2 -2 -1 -1 -1 3 3 3 0 -1 -1 -1 -1 -1 -1
NH -3 -3 0 -3 -2 -4 -4 -3 -1 -2 -2 -1 0 5 5 0 0 1 0 0
QED -4 -4 -3 -4 -2 -3 -4 -3 -2 -2 -1 -1 0 0 0 3 4 4 0 0
RK -4 -3 -2 -3 -2 -3 -3 -3 -2 -2 -1 -1 -1 0 0 1 0 -1 4 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.331561, K+ = 0.166931, (K- = 0.119824, C = 0.142078, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 70
# Entropy = 0.8059, Expected = -0.6140
C FY W ML IV G P A T S N H QE D R K
C 9 -2 -3 -2 -1 -3 -3 -1 -1 -1 -3 -4 -4 -4 -4 -4
FY -2 5 1 0 -1 -4 -4 -2 -2 -2 -3 0 -3 -4 -3 -3
W -3 1 11 -2 -3 -3 -4 -3 -3 -3 -4 -2 -3 -5 -3 -3
ML -2 0 -2 4 1 -4 -3 -2 -1 -2 -3 -3 -3 -4 -2 -2
IV -1 -1 -3 1 3 -4 -3 -1 0 -2 -3 -4 -3 -4 -3 -3
G -3 -4 -3 -4 -4 6 -3 0 -2 -1 -1 -2 -2 -2 -3 -2
P -3 -4 -4 -3 -3 -3 8 -1 -1 -1 -2 -2 -1 -2 -2 -1
A -1 -2 -3 -2 -1 0 -1 4 0 1 -2 -2 -1 -2 -2 -1
T -1 -2 -3 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1
S -1 -2 -3 -2 -2 -1 -1 1 1 4 0 -1 0 0 -1 0
N -3 -3 -4 -3 -3 -1 -2 -2 0 0 6 0 0 1 -1 0
H -4 0 -2 -3 -4 -2 -2 -2 -2 -1 0 8 0 -1 0 -1
QE -4 -3 -3 -3 -3 -2 -1 -1 -1 0 0 0 4 1 0 1
D -4 -4 -5 -4 -4 -2 -2 -2 -1 0 1 -1 1 6 -2 -1
R -4 -3 -3 -2 -3 -3 -2 -2 -1 -1 -1 0 0 -2 6 2
K -4 -3 -3 -2 -3 -2 -1 -1 -1 0 0 -1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.351252, K+ = 0.166438, (K- = 0.117140, C = 0.140349, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 70
# Entropy = 0.8100, Expected = -0.6196
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -3 -3 -2 -2 -1 -1 -3 -3 -1 -1 -1 -3 -4 -3 -4 -4 -4 -4
FY -2 5 5 1 -1 0 -1 -1 -4 -4 -2 -2 -2 -3 0 -3 -3 -4 -3 -3
W -3 1 2 11 -2 -2 -3 -3 -3 -4 -3 -3 -3 -4 -2 -2 -4 -5 -3 -3
ML -2 0 -1 -2 3 4 1 1 -4 -3 -2 -1 -2 -3 -3 -2 -3 -4 -2 -2
IV -1 -1 -1 -3 1 1 4 3 -4 -3 -1 0 -2 -3 -4 -3 -3 -4 -3 -3
G -3 -4 -4 -3 -3 -4 -4 -4 6 -3 0 -2 -1 -1 -2 -2 -2 -2 -3 -2
P -3 -4 -3 -4 -3 -3 -3 -3 -3 8 -1 -1 -1 -2 -2 -2 -1 -2 -2 -1
A -1 -2 -2 -3 -1 -2 -2 0 0 -1 4 0 1 -2 -2 -1 -1 -2 -2 -1
T -1 -2 -2 -3 -1 -2 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1 -1
S -1 -3 -2 -3 -2 -3 -3 -2 -1 -1 1 1 4 0 -1 0 0 0 -1 0
N -3 -3 -2 -4 -2 -4 -4 -3 -1 -2 -2 0 0 6 0 0 0 1 -1 0
H -4 -1 2 -2 -2 -3 -4 -3 -2 -2 -2 -2 -1 0 8 1 0 -1 0 -1
QE -4 -4 -2 -3 -1 -3 -3 -3 -2 -1 -1 -1 0 0 0 4 4 1 0 1
D -4 -4 -4 -5 -3 -4 -4 -4 -2 -2 -2 -1 0 1 -1 -1 1 6 -2 -1
R -4 -3 -2 -3 -2 -3 -3 -3 -3 -2 -2 -1 -1 -1 0 1 0 -2 6 2
K -4 -3 -2 -3 -2 -3 -3 -3 -2 -1 -1 -1 0 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.348974, K+ = 0.168643, (K- = 0.118963, C = 0.142361, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 70
# Entropy = 0.8391, Expected = -0.6313
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -3 -3 -2 -2 -1 -1 -3 -3 -1 -1 -1 -3 -4 -3 -4 -4 -4 -4
F -2 6 3 1 0 0 0 -1 -4 -4 -2 -2 -3 -3 -1 -3 -4 -4 -3 -3
Y -3 3 7 2 -1 -1 -1 -2 -4 -3 -2 -2 -2 -2 2 -2 -3 -4 -2 -2
W -3 1 2 11 -2 -2 -3 -3 -3 -4 -3 -3 -3 -4 -2 -2 -4 -5 -3 -3
M -2 0 -1 -2 6 2 1 1 -3 -3 -1 -1 -2 -2 -2 0 -2 -3 -2 -2
L -2 0 -1 -2 2 4 2 1 -4 -3 -2 -2 -3 -4 -3 -2 -3 -4 -3 -3
I -1 0 -1 -3 1 2 4 3 -4 -3 -2 -1 -3 -4 -4 -3 -4 -4 -3 -3
V -1 -1 -2 -3 1 1 3 4 -4 -3 0 0 -2 -3 -3 -2 -3 -4 -3 -3
G -3 -4 -4 -3 -3 -4 -4 -4 6 -3 0 -2 -1 -1 -2 -2 -2 -2 -3 -2
P -3 -4 -3 -4 -3 -3 -3 -3 -3 8 -1 -1 -1 -2 -2 -2 -1 -2 -2 -1
A -1 -2 -2 -3 -1 -2 -2 0 0 -1 4 0 1 -2 -2 -1 -1 -2 -2 -1
T -1 -2 -2 -3 -1 -2 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1 -1
S -1 -3 -2 -3 -2 -3 -3 -2 -1 -1 1 1 4 0 -1 0 0 0 -1 0
N -3 -3 -2 -4 -2 -4 -4 -3 -1 -2 -2 0 0 6 0 0 0 1 -1 0
H -4 -1 2 -2 -2 -3 -4 -3 -2 -2 -2 -2 -1 0 8 1 0 -1 0 -1
Q -3 -3 -2 -2 0 -2 -3 -2 -2 -2 -1 -1 0 0 1 6 2 -1 1 1
E -4 -4 -3 -4 -2 -3 -4 -3 -2 -1 -1 -1 0 0 0 2 5 1 0 1
D -4 -4 -4 -5 -3 -4 -4 -4 -2 -2 -2 -1 0 1 -1 -1 1 6 -2 -1
R -4 -3 -2 -3 -2 -3 -3 -3 -3 -2 -2 -1 -1 -1 0 1 0 -2 6 2
K -4 -3 -2 -3 -2 -3 -3 -3 -2 -1 -1 -1 0 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.344901, K+ = 0.168203, (K- = 0.119136, C = 0.142262, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 75
# Entropy = 0.6906, Expected = -0.5864
CFYW MLIV G P ATS NH QED RK
CFYW 4 -1 -4 -4 -2 -2 -4 -3
MLIV -1 3 -4 -3 -1 -3 -3 -3
G -4 -4 6 -3 -1 -1 -2 -2
P -4 -3 -3 8 -1 -3 -2 -2
ATS -2 -1 -1 -1 3 -1 -1 -1
NH -2 -3 -1 -3 -1 5 0 0
QED -4 -3 -2 -2 -1 0 4 0
RK -3 -3 -2 -2 -1 0 0 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.322092, K+ = 0.164591, (K- = 0.119268, C = 0.140715, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 75
# Entropy = 0.6994, Expected = -0.5995
C FY W ML IV G P A T S N H QE D R K
CFYW 5 4 5 -1 -1 -4 -4 -2 -2 -2 -3 0 -3 -4 -3 -3
MLIV -1 -1 -2 3 3 -4 -3 -1 -1 -2 -4 -3 -3 -4 -3 -3
G -3 -4 -3 -4 -4 6 -3 0 -2 -1 -1 -2 -2 -2 -3 -2
P -4 -4 -5 -3 -3 -3 8 -1 -1 -1 -3 -2 -2 -2 -2 -1
ATS -1 -2 -3 -2 -1 -1 -1 3 3 3 0 -2 -1 -1 -1 -1
NH -4 -1 -3 -3 -4 -1 -3 -2 -1 0 5 5 0 1 -1 0
QED -4 -3 -4 -3 -3 -2 -2 -1 -1 0 0 0 3 4 0 0
RK -4 -3 -4 -3 -3 -2 -2 -1 -1 -1 0 0 1 -1 5 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.321718, K+ = 0.167560, (K- = 0.121464, C = 0.143278, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 75
# Entropy = 0.7028, Expected = -0.6049
C F Y W M L I V G P A T S N H Q E D R K
CFYW 5 4 4 5 -1 -1 -1 -1 -4 -4 -2 -2 -2 -3 0 -3 -4 -4 -3 -3
MLIV -1 0 -2 -2 2 3 3 3 -4 -3 -1 -1 -2 -4 -3 -2 -3 -4 -3 -3
G -3 -4 -4 -3 -3 -4 -5 -4 6 -3 0 -2 -1 -1 -2 -2 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -3 -3 -3 -3 8 -1 -1 -1 -3 -2 -2 -1 -2 -2 -1
ATS -1 -3 -2 -3 -1 -2 -2 -1 -1 -1 3 3 3 0 -2 -1 -1 -1 -1 -1
NH -4 -3 0 -3 -2 -4 -4 -3 -1 -3 -2 -1 0 5 5 0 0 1 -1 0
QED -4 -4 -3 -4 -2 -4 -4 -3 -2 -2 -1 -1 0 0 0 3 4 4 0 0
RK -4 -3 -2 -4 -2 -3 -3 -3 -2 -2 -1 -1 -1 0 0 1 0 -1 5 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.323542, K+ = 0.171088, (K- = 0.123796, C = 0.146170, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 75
# Entropy = 0.8705, Expected = -0.6655
C FY W ML IV G P A T S N H QE D R K
C 9 -3 -3 -2 -1 -3 -4 -1 -1 -1 -3 -4 -4 -4 -4 -4
FY -3 5 1 0 -1 -4 -4 -2 -2 -2 -3 0 -3 -4 -3 -3
W -3 1 11 -2 -3 -3 -5 -3 -3 -3 -4 -2 -3 -5 -3 -4
ML -2 0 -2 4 1 -4 -3 -2 -1 -3 -4 -3 -3 -4 -3 -3
IV -1 -1 -3 1 4 -4 -3 -1 -1 -2 -4 -4 -3 -4 -3 -3
G -3 -4 -3 -4 -4 6 -3 0 -2 -1 -1 -2 -2 -2 -3 -2
P -4 -4 -5 -3 -3 -3 8 -1 -1 -1 -3 -2 -2 -2 -2 -1
A -1 -2 -3 -2 -1 0 -1 4 0 1 -2 -2 -1 -2 -2 -1
T -1 -2 -3 -1 -1 -2 -1 0 5 1 0 -2 -1 -1 -1 -1
S -1 -2 -3 -3 -2 -1 -1 1 1 5 0 -1 0 -1 -1 0
N -3 -3 -4 -4 -4 -1 -3 -2 0 0 6 0 0 1 -1 0
H -4 0 -2 -3 -4 -2 -2 -2 -2 -1 0 8 0 -1 0 -1
QE -4 -3 -3 -3 -3 -2 -2 -1 -1 0 0 0 4 1 0 1
D -4 -4 -5 -4 -4 -2 -2 -2 -1 -1 1 -1 1 6 -2 -1
R -4 -3 -3 -3 -3 -3 -2 -2 -1 -1 -1 0 0 -2 6 2
K -4 -3 -4 -3 -3 -2 -1 -1 -1 0 0 -1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.344594, K+ = 0.174193, (K- = 0.123417, C = 0.147350, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 75
# Entropy = 0.8748, Expected = -0.6717
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -3 -3 -2 -2 -1 -1 -3 -4 -1 -1 -1 -3 -4 -3 -5 -4 -4 -4
FY -3 5 5 1 -1 0 -1 -1 -4 -4 -2 -2 -2 -3 0 -3 -3 -4 -3 -3
W -3 1 2 11 -2 -2 -3 -3 -3 -5 -3 -3 -3 -4 -2 -2 -4 -5 -3 -4
ML -2 0 -1 -2 3 4 1 1 -4 -3 -2 -1 -3 -4 -3 -2 -3 -4 -3 -3
IV -1 -1 -2 -3 1 1 4 4 -4 -3 -1 -1 -2 -4 -4 -3 -3 -4 -3 -3
G -3 -4 -4 -3 -3 -4 -5 -4 6 -3 0 -2 -1 -1 -2 -2 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -3 -3 -3 -3 8 -1 -1 -1 -3 -2 -2 -1 -2 -2 -1
A -1 -3 -2 -3 -1 -2 -2 0 0 -1 4 0 1 -2 -2 -1 -1 -2 -2 -1
T -1 -2 -2 -3 -1 -2 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1 -1
S -1 -3 -2 -3 -2 -3 -3 -2 -1 -1 1 1 5 0 -1 0 0 -1 -1 0
N -3 -4 -3 -4 -3 -4 -4 -3 -1 -3 -2 0 0 6 0 0 -1 1 -1 0
H -4 -2 2 -2 -2 -3 -4 -4 -2 -2 -2 -2 -1 0 8 1 0 -1 0 -1
QE -4 -4 -3 -3 -1 -3 -4 -3 -2 -2 -1 -1 0 0 0 4 5 1 0 1
D -4 -4 -4 -5 -4 -4 -4 -4 -2 -2 -2 -1 -1 1 -1 -1 1 6 -2 -1
R -4 -3 -2 -3 -2 -3 -3 -3 -3 -2 -2 -1 -1 -1 0 1 0 -2 6 2
K -4 -4 -2 -4 -2 -3 -3 -3 -2 -1 -1 -1 0 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.343656, K+ = 0.175832, (K- = 0.124695, C = 0.148802, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 75
# Entropy = 0.9077, Expected = -0.6845
C F Y W M L I V G P A T S N H Q E D R K
C 9 -2 -3 -3 -2 -2 -1 -1 -3 -4 -1 -1 -1 -3 -4 -3 -5 -4 -4 -4
F -2 6 3 1 0 0 0 -1 -4 -4 -3 -2 -3 -4 -2 -4 -4 -4 -3 -4
Y -3 3 7 2 -2 -1 -2 -2 -4 -4 -2 -2 -2 -3 2 -2 -3 -4 -2 -2
W -3 1 2 11 -2 -2 -3 -3 -3 -5 -3 -3 -3 -4 -2 -2 -4 -5 -3 -4
M -2 0 -2 -2 6 2 1 1 -3 -3 -1 -1 -2 -3 -2 0 -2 -4 -2 -2
L -2 0 -1 -2 2 4 1 1 -4 -3 -2 -2 -3 -4 -3 -3 -4 -4 -3 -3
I -1 0 -2 -3 1 1 4 3 -5 -3 -2 -1 -3 -4 -4 -3 -4 -4 -3 -3
V -1 -1 -2 -3 1 1 3 4 -4 -3 0 0 -2 -3 -4 -2 -3 -4 -3 -3
G -3 -4 -4 -3 -3 -4 -5 -4 6 -3 0 -2 -1 -1 -2 -2 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -3 -3 -3 -3 8 -1 -1 -1 -3 -2 -2 -1 -2 -2 -1
A -1 -3 -2 -3 -1 -2 -2 0 0 -1 4 0 1 -2 -2 -1 -1 -2 -2 -1
T -1 -2 -2 -3 -1 -2 -1 0 -2 -1 0 5 1 0 -2 -1 -1 -1 -1 -1
S -1 -3 -2 -3 -2 -3 -3 -2 -1 -1 1 1 5 0 -1 0 0 -1 -1 0
N -3 -4 -3 -4 -3 -4 -4 -3 -1 -3 -2 0 0 6 0 0 -1 1 -1 0
H -4 -2 2 -2 -2 -3 -4 -4 -2 -2 -2 -2 -1 0 8 1 0 -1 0 -1
Q -3 -4 -2 -2 0 -3 -3 -2 -2 -2 -1 -1 0 0 1 6 2 -1 1 1
E -5 -4 -3 -4 -2 -4 -4 -3 -3 -1 -1 -1 0 -1 0 2 5 1 0 1
D -4 -4 -4 -5 -4 -4 -4 -4 -2 -2 -2 -1 -1 1 -1 -1 1 6 -2 -1
R -4 -3 -2 -3 -2 -3 -3 -3 -3 -2 -2 -1 -1 -1 0 1 0 -2 6 2
K -4 -4 -2 -4 -2 -3 -3 -3 -2 -1 -1 -1 0 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.354149, K+ = 0.177540, (K- = 0.124592, C = 0.149507, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 80
# Entropy = 0.7472, Expected = -0.6377
CFYW MLIV G P ATS NH QED RK
CFYW 5 -1 -4 -4 -2 -2 -4 -3
MLIV -1 3 -4 -3 -2 -4 -3 -3
G -4 -4 6 -3 -1 -1 -2 -2
P -4 -3 -3 8 -1 -3 -2 -2
ATS -2 -2 -1 -1 3 -1 -1 -1
NH -2 -4 -1 -3 -1 5 0 0
QED -4 -3 -2 -2 -1 0 4 0
RK -3 -3 -2 -2 -1 0 0 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.323331, K+ = 0.176397, (K- = 0.127665, C = 0.150720, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 80
# Entropy = 0.7560, Expected = -0.6516
C FY W ML IV G P A T S N H QE D R K
CFYW 5 4 5 -1 -1 -4 -4 -2 -2 -2 -3 -1 -4 -4 -3 -3
MLIV -2 -1 -3 3 3 -4 -3 -1 -1 -3 -4 -3 -3 -4 -3 -3
G -4 -4 -4 -4 -4 6 -3 0 -2 -1 -1 -3 -3 -2 -3 -2
P -4 -4 -5 -3 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -1
ATS -1 -2 -4 -2 -1 -1 -1 3 3 3 -1 -2 -1 -1 -1 -1
NH -4 -1 -4 -3 -4 -1 -3 -2 -1 0 5 5 0 1 -1 0
QED -4 -4 -4 -3 -4 -2 -2 -1 -1 -1 0 0 4 4 -1 0
RK -4 -3 -4 -3 -3 -2 -2 -1 -1 -1 0 -1 0 -2 5 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.330039, K+ = 0.182312, (K- = 0.131063, C = 0.155280, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 80
# Entropy = 0.7594, Expected = -0.6573
C F Y W M L I V G P A T S N H Q E D R K
CFYW 5 4 4 5 -1 -1 -1 -2 -4 -4 -2 -2 -2 -3 -1 -3 -4 -4 -3 -3
MLIV -2 0 -2 -3 2 3 3 3 -4 -3 -1 -1 -3 -4 -3 -2 -3 -4 -3 -3
G -4 -4 -4 -4 -4 -4 -5 -4 6 -3 0 -2 -1 -1 -3 -2 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -3 -4 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -2 -1
ATS -1 -3 -2 -4 -1 -2 -2 -1 -1 -1 3 3 3 -1 -2 -1 -1 -1 -1 -1
NH -4 -3 0 -4 -3 -4 -4 -4 -1 -3 -2 -1 0 5 5 0 0 1 -1 0
QED -4 -4 -3 -4 -2 -4 -4 -3 -2 -2 -1 -1 -1 0 0 3 4 4 -1 0
RK -4 -4 -3 -4 -2 -3 -3 -3 -2 -2 -1 -1 -1 0 -1 1 0 -2 5 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.337514, K+ = 0.186624, (K- = 0.133164, C = 0.158393, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 80
# Entropy = 0.9460, Expected = -0.7240
C FY W ML IV G P A T S N H QE D R K
C 9 -3 -3 -2 -1 -4 -4 -1 -1 -2 -3 -4 -4 -4 -4 -4
FY -3 5 1 0 -1 -4 -4 -3 -2 -3 -3 0 -3 -4 -3 -3
W -3 1 11 -2 -3 -4 -5 -3 -4 -4 -4 -3 -3 -6 -4 -4
ML -2 0 -2 4 1 -4 -3 -2 -1 -3 -4 -3 -3 -5 -3 -3
IV -1 -1 -3 1 4 -4 -3 -1 -1 -2 -4 -4 -3 -4 -3 -3
G -4 -4 -4 -4 -4 6 -3 0 -2 -1 -1 -3 -3 -2 -3 -2
P -4 -4 -5 -3 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -1
A -1 -3 -3 -2 -1 0 -1 5 0 1 -2 -2 -1 -2 -2 -1
T -1 -2 -4 -1 -1 -2 -2 0 5 1 0 -2 -1 -1 -1 -1
S -2 -3 -4 -3 -2 -1 -1 1 1 5 0 -1 0 -1 -1 -1
N -3 -3 -4 -4 -4 -1 -3 -2 0 0 6 0 0 1 -1 0
H -4 0 -3 -3 -4 -3 -3 -2 -2 -1 0 8 0 -2 0 -1
QE -4 -3 -3 -3 -3 -3 -2 -1 -1 0 0 0 5 1 0 1
D -4 -4 -6 -5 -4 -2 -2 -2 -1 -1 1 -2 1 6 -2 -1
R -4 -3 -4 -3 -3 -3 -2 -2 -1 -1 -1 0 0 -2 6 2
K -4 -3 -4 -3 -3 -2 -1 -1 -1 -1 0 -1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.339559, K+ = 0.179014, (K- = 0.127473, C = 0.151788, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 80
# Entropy = 0.9504, Expected = -0.7305
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -3 -3 -2 -2 -2 -1 -4 -4 -1 -1 -2 -3 -4 -4 -5 -4 -4 -4
FY -3 5 6 1 -1 0 -1 -2 -4 -4 -3 -2 -3 -3 0 -3 -4 -4 -3 -3
W -3 0 2 11 -2 -2 -3 -3 -4 -5 -3 -4 -4 -4 -3 -3 -4 -6 -4 -4
ML -2 0 -2 -2 4 4 1 1 -4 -3 -2 -1 -3 -4 -3 -2 -3 -5 -3 -3
IV -1 -1 -2 -3 1 1 4 4 -4 -3 -1 -1 -2 -4 -4 -3 -3 -4 -3 -3
G -4 -4 -4 -4 -4 -4 -5 -4 6 -3 0 -2 -1 -1 -3 -2 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -3 -4 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -2 -1
A -1 -3 -2 -3 -1 -2 -2 0 0 -1 5 0 1 -2 -2 -1 -1 -2 -2 -1
T -1 -2 -2 -4 -1 -2 -1 0 -2 -2 0 5 1 0 -2 -1 -1 -1 -1 -1
S -2 -3 -2 -4 -2 -3 -3 -2 -1 -1 1 1 5 0 -1 0 0 -1 -1 -1
N -3 -4 -3 -4 -3 -4 -4 -4 -1 -3 -2 0 0 6 0 0 -1 1 -1 0
H -4 -2 2 -3 -2 -3 -4 -4 -3 -3 -2 -2 -1 0 8 1 0 -2 0 -1
QE -4 -4 -3 -3 -1 -3 -4 -3 -3 -2 -1 -1 0 0 0 4 5 1 0 1
D -4 -4 -4 -6 -4 -5 -4 -4 -2 -2 -2 -1 -1 1 -2 -1 1 6 -2 -1
R -4 -4 -3 -4 -2 -3 -3 -3 -3 -2 -2 -1 -1 -1 0 1 -1 -2 6 2
K -4 -4 -3 -4 -2 -3 -3 -3 -2 -1 -1 -1 -1 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.341966, K+ = 0.182885, (K- = 0.129917, C = 0.154895, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 80
# Entropy = 0.9868, Expected = -0.7442
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -3 -3 -2 -2 -2 -1 -4 -4 -1 -1 -2 -3 -4 -4 -5 -4 -4 -4
F -3 6 3 0 0 0 -1 -1 -4 -4 -3 -2 -3 -4 -2 -4 -4 -4 -4 -4
Y -3 3 7 2 -2 -2 -2 -2 -4 -4 -2 -2 -2 -3 2 -2 -3 -4 -3 -3
W -3 0 2 11 -2 -2 -3 -3 -4 -5 -3 -4 -4 -4 -3 -3 -4 -6 -4 -4
M -2 0 -2 -2 6 2 1 1 -4 -3 -1 -1 -2 -3 -2 0 -2 -4 -2 -2
L -2 0 -2 -2 2 4 1 1 -4 -3 -2 -2 -3 -4 -3 -3 -4 -5 -3 -3
I -2 -1 -2 -3 1 1 5 3 -5 -4 -2 -1 -3 -4 -4 -3 -4 -4 -3 -3
V -1 -1 -2 -3 1 1 3 4 -4 -3 0 0 -2 -4 -4 -3 -3 -4 -3 -3
G -4 -4 -4 -4 -4 -4 -5 -4 6 -3 0 -2 -1 -1 -3 -2 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -3 -4 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -2 -1
A -1 -3 -2 -3 -1 -2 -2 0 0 -1 5 0 1 -2 -2 -1 -1 -2 -2 -1
T -1 -2 -2 -4 -1 -2 -1 0 -2 -2 0 5 1 0 -2 -1 -1 -1 -1 -1
S -2 -3 -2 -4 -2 -3 -3 -2 -1 -1 1 1 5 0 -1 0 0 -1 -1 -1
N -3 -4 -3 -4 -3 -4 -4 -4 -1 -3 -2 0 0 6 0 0 -1 1 -1 0
H -4 -2 2 -3 -2 -3 -4 -4 -3 -3 -2 -2 -1 0 8 1 0 -2 0 -1
Q -4 -4 -2 -3 0 -3 -3 -3 -2 -2 -1 -1 0 0 1 6 2 -1 1 1
E -5 -4 -3 -4 -2 -4 -4 -3 -3 -2 -1 -1 0 -1 0 2 6 1 -1 1
D -4 -4 -4 -6 -4 -5 -4 -4 -2 -2 -2 -1 -1 1 -2 -1 1 6 -2 -1
R -4 -4 -3 -4 -2 -3 -3 -3 -3 -2 -2 -1 -1 -1 0 1 -1 -2 6 2
K -4 -4 -3 -4 -2 -3 -3 -3 -2 -1 -1 -1 -1 0 -1 1 1 -1 2 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.350826, K+ = 0.185160, (K- = 0.130372, C = 0.156168, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 85
# Entropy = 0.8145, Expected = -0.6998
CFYW MLIV G P ATS NH QED RK
CFYW 5 -1 -4 -4 -2 -2 -4 -4
MLIV -1 3 -5 -3 -2 -4 -4 -3
G -4 -5 6 -3 -1 -2 -2 -3
P -4 -3 -3 8 -1 -3 -2 -2
ATS -2 -2 -1 -1 3 -1 -1 -1
NH -2 -4 -2 -3 -1 5 0 -1
QED -4 -4 -2 -2 -1 0 4 0
RK -4 -3 -3 -2 -1 -1 0 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.327542, K+ = 0.191645, (K- = 0.138117, C = 0.163422, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 85
# Entropy = 0.8232, Expected = -0.7144
C FY W ML IV G P A T S N H QE D R K
CFYW 5 4 5 -1 -2 -4 -4 -2 -2 -3 -4 -1 -4 -5 -4 -4
MLIV -2 -1 -3 3 3 -5 -3 -1 -1 -3 -4 -4 -3 -5 -3 -3
G -4 -4 -4 -5 -5 6 -3 0 -2 -1 -1 -3 -3 -2 -3 -2
P -4 -4 -5 -3 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -2
ATS -1 -3 -4 -2 -1 -1 -1 3 3 3 -1 -2 -1 -2 -2 -1
NH -4 -2 -4 -4 -4 -2 -3 -2 -1 0 5 6 0 1 -1 -1
QED -5 -4 -4 -4 -4 -2 -2 -2 -1 -1 0 -1 4 4 -1 0
RK -4 -3 -4 -3 -3 -3 -2 -1 -1 -1 -1 -1 0 -2 5 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.347116, K+ = 0.206126, (K- = 0.145674, C = 0.174155, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 85
# Entropy = 0.8267, Expected = -0.7204
C F Y W M L I V G P A T S N H Q E D R K
CFYW 5 4 5 5 -1 -1 -1 -2 -4 -4 -2 -2 -3 -4 -1 -3 -4 -5 -4 -4
MLIV -2 0 -2 -3 3 3 3 3 -5 -3 -1 -1 -3 -4 -4 -3 -4 -5 -3 -3
G -4 -4 -5 -4 -4 -5 -5 -4 6 -3 0 -2 -1 -1 -3 -3 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -4 -4 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -2 -2
ATS -1 -3 -2 -4 -2 -2 -2 -1 -1 -1 3 3 3 -1 -2 -1 -1 -2 -2 -1
NH -4 -3 0 -4 -3 -4 -4 -4 -2 -3 -2 -1 0 5 6 0 -1 1 -1 -1
QED -5 -4 -3 -4 -2 -4 -4 -3 -2 -2 -2 -1 -1 0 -1 3 4 4 -1 0
RK -4 -4 -3 -4 -2 -3 -4 -3 -3 -2 -1 -1 -1 -1 -1 1 0 -2 5 4
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.343899, K+ = 0.203674, (K- = 0.144405, C = 0.172344, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 85
# Entropy = 1.0337, Expected = -0.7933
C FY W ML IV G P A T S N H QE D R K
C 9 -3 -4 -2 -2 -4 -4 -1 -2 -2 -4 -5 -5 -5 -4 -4
FY -3 6 1 -1 -1 -4 -4 -3 -2 -3 -3 0 -4 -4 -3 -3
W -4 1 11 -2 -3 -4 -5 -3 -4 -4 -5 -3 -4 -6 -4 -5
ML -2 -1 -2 4 1 -5 -3 -2 -2 -3 -4 -3 -3 -5 -3 -3
IV -2 -1 -3 1 4 -5 -3 -1 -1 -3 -4 -4 -3 -5 -3 -3
G -4 -4 -4 -5 -5 6 -3 0 -2 -1 -1 -3 -3 -2 -3 -2
P -4 -4 -5 -3 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -2
A -1 -3 -3 -2 -1 0 -1 5 0 1 -2 -2 -1 -2 -2 -1
T -2 -2 -4 -2 -1 -2 -2 0 5 1 0 -2 -1 -2 -2 -1
S -2 -3 -4 -3 -3 -1 -1 1 1 5 0 -1 -1 -1 -1 -1
N -4 -3 -5 -4 -4 -1 -3 -2 0 0 7 0 -1 1 -1 0
H -5 0 -3 -3 -4 -3 -3 -2 -2 -1 0 8 0 -2 0 -1
QE -5 -4 -4 -3 -3 -3 -2 -1 -1 -1 -1 0 5 1 0 1
D -5 -4 -6 -5 -5 -2 -2 -2 -2 -1 1 -2 1 7 -2 -1
R -4 -3 -4 -3 -3 -3 -2 -2 -2 -1 -1 0 0 -2 6 2
K -4 -3 -5 -3 -3 -2 -2 -1 -1 -1 0 -1 1 -1 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.335901, K+ = 0.189539, (K- = 0.135462, C = 0.160990, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 85
# Entropy = 1.0383, Expected = -0.8002
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -3 -4 -2 -2 -2 -1 -4 -4 -1 -2 -2 -4 -5 -4 -5 -5 -4 -4
FY -3 6 6 1 -1 0 -1 -2 -4 -4 -3 -2 -3 -3 0 -3 -4 -4 -3 -3
W -4 0 2 11 -2 -3 -3 -3 -4 -5 -3 -4 -4 -5 -3 -3 -4 -6 -4 -5
ML -2 0 -2 -2 4 4 1 0 -5 -3 -2 -2 -3 -4 -3 -2 -4 -5 -3 -3
IV -2 -1 -2 -3 1 1 4 4 -5 -3 -1 -1 -3 -4 -4 -3 -3 -5 -3 -3
G -4 -4 -5 -4 -4 -5 -5 -4 6 -3 0 -2 -1 -1 -3 -3 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -4 -4 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -2 -2
A -1 -3 -3 -3 -2 -2 -2 -1 0 -1 5 0 1 -2 -2 -1 -1 -2 -2 -1
T -2 -3 -2 -4 -1 -2 -1 0 -2 -2 0 5 1 0 -2 -1 -1 -2 -2 -1
S -2 -3 -2 -4 -2 -3 -3 -2 -1 -1 1 1 5 0 -1 -1 -1 -1 -1 -1
N -4 -4 -3 -5 -3 -4 -4 -4 -1 -3 -2 0 0 7 0 0 -1 1 -1 0
H -5 -2 2 -3 -3 -3 -4 -4 -3 -3 -2 -2 -1 0 8 1 -1 -2 0 -1
QE -5 -4 -3 -4 -2 -3 -4 -3 -3 -2 -1 -1 -1 -1 0 4 5 1 0 1
D -5 -4 -4 -6 -4 -5 -5 -4 -2 -2 -2 -2 -1 1 -2 -1 1 7 -2 -1
R -4 -4 -3 -4 -2 -3 -4 -3 -3 -2 -2 -2 -1 -1 0 1 -1 -2 6 2
K -4 -4 -3 -5 -2 -3 -3 -3 -2 -2 -1 -1 -1 0 -1 1 0 -1 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.339704, K+ = 0.190538, (K- = 0.135660, C = 0.161549, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 85
# Entropy = 1.0805, Expected = -0.8153
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -3 -4 -2 -2 -2 -1 -4 -4 -1 -2 -2 -4 -5 -4 -5 -5 -4 -4
F -3 7 3 0 -1 0 -1 -1 -4 -4 -3 -3 -3 -4 -2 -4 -4 -4 -4 -4
Y -3 3 7 2 -2 -2 -2 -2 -5 -4 -3 -2 -2 -3 2 -2 -4 -4 -3 -3
W -4 0 2 11 -2 -3 -3 -3 -4 -5 -3 -4 -4 -5 -3 -3 -4 -6 -4 -5
M -2 -1 -2 -2 7 2 1 0 -4 -3 -2 -1 -2 -3 -3 0 -3 -4 -2 -2
L -2 0 -2 -3 2 4 1 0 -5 -4 -2 -2 -3 -4 -3 -3 -4 -5 -3 -3
I -2 -1 -2 -3 1 1 5 3 -5 -4 -2 -1 -3 -4 -4 -4 -4 -5 -4 -3
V -1 -1 -2 -3 0 0 3 5 -4 -3 -1 0 -2 -4 -4 -3 -3 -4 -3 -3
G -4 -4 -5 -4 -4 -5 -5 -4 6 -3 0 -2 -1 -1 -3 -3 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -4 -4 -3 -3 8 -1 -2 -1 -3 -3 -2 -2 -2 -2 -2
A -1 -3 -3 -3 -2 -2 -2 -1 0 -1 5 0 1 -2 -2 -1 -1 -2 -2 -1
T -2 -3 -2 -4 -1 -2 -1 0 -2 -2 0 5 1 0 -2 -1 -1 -2 -2 -1
S -2 -3 -2 -4 -2 -3 -3 -2 -1 -1 1 1 5 0 -1 -1 -1 -1 -1 -1
N -4 -4 -3 -5 -3 -4 -4 -4 -1 -3 -2 0 0 7 0 0 -1 1 -1 0
H -5 -2 2 -3 -3 -3 -4 -4 -3 -3 -2 -2 -1 0 8 1 -1 -2 0 -1
Q -4 -4 -2 -3 0 -3 -4 -3 -3 -2 -1 -1 -1 0 1 6 2 -1 1 1
E -5 -4 -4 -4 -3 -4 -4 -3 -3 -2 -1 -1 -1 -1 -1 2 6 1 -1 0
D -5 -4 -4 -6 -4 -5 -5 -4 -2 -2 -2 -2 -1 1 -2 -1 1 7 -2 -1
R -4 -4 -3 -4 -2 -3 -4 -3 -3 -2 -2 -2 -1 -1 0 1 -1 -2 6 2
K -4 -4 -3 -5 -2 -3 -3 -3 -2 -2 -1 -1 -1 0 -1 1 0 -1 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.345553, K+ = 0.191241, (K- = 0.135366, C = 0.161698, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 90
# Entropy = 0.8850, Expected = -0.7639
CFYW MLIV G P ATS NH QED RK
CFYW 5 -2 -5 -4 -3 -2 -4 -4
MLIV -2 3 -5 -4 -2 -4 -4 -3
G -5 -5 6 -3 -1 -2 -3 -3
P -4 -4 -3 8 -1 -3 -2 -2
ATS -3 -2 -1 -1 3 -1 -1 -1
NH -2 -4 -2 -3 -1 6 0 -1
QED -4 -4 -3 -2 -1 0 4 0
RK -4 -3 -3 -2 -1 -1 0 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.338246, K+ = 0.208894, (K- = 0.148945, C = 0.177233, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 90
# Entropy = 0.8935, Expected = -0.7791
C FY W ML IV G P A T S N H QE D R K
CFYW 5 5 5 -1 -2 -5 -4 -2 -3 -3 -4 -1 -4 -5 -4 -4
MLIV -2 -1 -3 3 3 -5 -4 -2 -1 -3 -4 -4 -3 -5 -3 -3
G -4 -5 -4 -5 -5 6 -3 0 -3 -1 -1 -3 -3 -2 -3 -2
P -4 -4 -5 -4 -4 -3 8 -1 -2 -2 -3 -3 -2 -3 -3 -2
ATS -2 -3 -4 -2 -2 -1 -1 3 3 3 -1 -2 -1 -2 -2 -1
NH -4 -2 -4 -4 -4 -2 -3 -2 -1 0 6 6 0 0 -1 -1
QED -5 -4 -5 -4 -4 -3 -2 -2 -1 -1 0 -1 4 4 -1 0
RK -4 -3 -4 -3 -3 -3 -2 -1 -1 -1 -1 -1 0 -2 5 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.339795, K+ = 0.210910, (K- = 0.150150, C = 0.178813, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 90
# Entropy = 0.8970, Expected = -0.7853
C F Y W M L I V G P A T S N H Q E D R K
CFYW 5 5 5 5 -2 -1 -2 -2 -5 -4 -2 -3 -3 -4 -1 -3 -4 -5 -4 -4
MLIV -2 -1 -2 -3 3 3 3 3 -5 -4 -2 -1 -3 -4 -4 -3 -4 -5 -3 -3
G -4 -5 -5 -4 -4 -5 -5 -5 6 -3 0 -3 -1 -1 -3 -3 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -4 -4 -3 -3 8 -1 -2 -2 -3 -3 -2 -2 -3 -3 -2
ATS -2 -3 -3 -4 -2 -2 -2 -1 -1 -1 3 3 3 -1 -2 -1 -1 -2 -2 -1
NH -4 -3 -1 -4 -3 -4 -4 -4 -2 -3 -2 -1 0 6 6 0 -1 0 -1 -1
QED -5 -4 -4 -5 -2 -4 -4 -4 -3 -2 -2 -1 -1 0 -1 3 4 4 -1 0
RK -4 -4 -3 -4 -2 -3 -4 -3 -3 -2 -1 -1 -1 -1 -1 1 0 -2 5 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.342650, K+ = 0.212674, (K- = 0.150974, C = 0.180066, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 90
# Entropy = 1.1266, Expected = -0.8648
C FY W ML IV G P A T S N H QE D R K
C 9 -3 -4 -2 -2 -4 -4 -1 -2 -2 -4 -5 -5 -5 -5 -4
FY -3 6 1 -1 -2 -5 -4 -3 -3 -3 -4 0 -4 -5 -3 -3
W -4 1 11 -3 -4 -4 -5 -4 -4 -4 -5 -3 -4 -6 -4 -5
ML -2 -1 -3 4 1 -5 -4 -2 -2 -3 -4 -3 -3 -5 -3 -3
IV -2 -2 -4 1 4 -5 -4 -1 -1 -3 -4 -4 -3 -5 -4 -3
G -4 -5 -4 -5 -5 6 -3 0 -3 -1 -1 -3 -3 -2 -3 -2
P -4 -4 -5 -4 -4 -3 8 -1 -2 -2 -3 -3 -2 -3 -3 -2
A -1 -3 -4 -2 -1 0 -1 5 0 1 -2 -2 -1 -3 -2 -1
T -2 -3 -4 -2 -1 -3 -2 0 6 1 0 -2 -1 -2 -2 -1
S -2 -3 -4 -3 -3 -1 -2 1 1 5 0 -2 -1 -1 -1 -1
N -4 -4 -5 -4 -4 -1 -3 -2 0 0 7 0 -1 1 -1 0
H -5 0 -3 -3 -4 -3 -3 -2 -2 -2 0 8 0 -2 0 -1
QE -5 -4 -4 -3 -3 -3 -2 -1 -1 -1 -1 0 5 1 0 1
D -5 -5 -6 -5 -5 -2 -3 -3 -2 -1 1 -2 1 7 -3 -1
R -5 -3 -4 -3 -4 -3 -3 -2 -2 -1 -1 0 0 -3 6 2
K -4 -3 -5 -3 -3 -2 -2 -1 -1 -1 0 -1 1 -1 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.342037, K+ = 0.200279, (K- = 0.142263, C = 0.169620, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 90
# Entropy = 1.1312, Expected = -0.8720
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -4 -4 -2 -2 -2 -2 -4 -4 -1 -2 -2 -4 -5 -4 -6 -5 -5 -4
FY -3 6 6 1 -1 -1 -1 -2 -5 -4 -3 -3 -3 -4 0 -3 -4 -5 -3 -3
W -4 0 2 11 -2 -3 -4 -3 -4 -5 -4 -4 -4 -5 -3 -3 -5 -6 -4 -5
ML -2 0 -2 -3 4 4 1 0 -5 -4 -2 -2 -3 -4 -3 -2 -4 -5 -3 -3
IV -2 -1 -2 -4 1 1 4 4 -5 -4 -1 -1 -3 -4 -4 -3 -4 -5 -4 -3
G -4 -5 -5 -4 -4 -5 -5 -5 6 -3 0 -3 -1 -1 -3 -3 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -4 -4 -3 -3 8 -1 -2 -2 -3 -3 -2 -2 -3 -3 -2
A -1 -3 -3 -4 -2 -2 -2 -1 0 -1 5 0 1 -2 -2 -1 -1 -3 -2 -1
T -2 -3 -2 -4 -1 -2 -1 -1 -3 -2 0 6 1 0 -2 -1 -1 -2 -2 -1
S -2 -3 -3 -4 -2 -3 -3 -2 -1 -2 1 1 5 0 -2 -1 -1 -1 -1 -1
N -4 -4 -3 -5 -3 -4 -4 -4 -1 -3 -2 0 0 7 0 0 -1 1 -1 0
H -5 -2 1 -3 -3 -4 -4 -4 -3 -3 -2 -2 -2 0 8 1 -1 -2 0 -1
QE -5 -4 -3 -4 -2 -4 -4 -3 -3 -2 -1 -1 -1 -1 0 5 5 1 0 1
D -5 -5 -4 -6 -4 -5 -5 -5 -2 -3 -3 -2 -1 1 -2 -1 1 7 -3 -1
R -5 -4 -3 -4 -2 -3 -4 -3 -3 -3 -2 -2 -1 -1 0 1 -1 -3 6 2
K -4 -4 -3 -5 -2 -3 -4 -3 -2 -2 -1 -1 -1 0 -1 1 0 -1 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.343480, K+ = 0.200212, (K- = 0.142010, C = 0.169448, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 90
# Entropy = 1.1806, Expected = -0.8887
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -4 -4 -2 -2 -2 -2 -4 -4 -1 -2 -2 -4 -5 -4 -6 -5 -5 -4
F -3 7 3 0 -1 0 -1 -2 -5 -4 -3 -3 -3 -4 -2 -4 -5 -5 -4 -4
Y -4 3 8 2 -2 -2 -2 -3 -5 -4 -3 -2 -3 -3 1 -3 -4 -4 -3 -3
W -4 0 2 11 -2 -3 -4 -3 -4 -5 -4 -4 -4 -5 -3 -3 -5 -6 -4 -5
M -2 -1 -2 -2 7 2 1 0 -4 -3 -2 -1 -2 -3 -3 0 -3 -4 -2 -2
L -2 0 -2 -3 2 5 1 0 -5 -4 -2 -2 -3 -4 -4 -3 -4 -5 -3 -3
I -2 -1 -2 -4 1 1 5 3 -5 -4 -2 -1 -3 -4 -4 -4 -4 -5 -4 -4
V -2 -2 -3 -3 0 0 3 5 -5 -3 -1 -1 -2 -4 -4 -3 -3 -5 -3 -3
G -4 -5 -5 -4 -4 -5 -5 -5 6 -3 0 -3 -1 -1 -3 -3 -3 -2 -3 -2
P -4 -4 -4 -5 -3 -4 -4 -3 -3 8 -1 -2 -2 -3 -3 -2 -2 -3 -3 -2
A -1 -3 -3 -4 -2 -2 -2 -1 0 -1 5 0 1 -2 -2 -1 -1 -3 -2 -1
T -2 -3 -2 -4 -1 -2 -1 -1 -3 -2 0 6 1 0 -2 -1 -1 -2 -2 -1
S -2 -3 -3 -4 -2 -3 -3 -2 -1 -2 1 1 5 0 -2 -1 -1 -1 -1 -1
N -4 -4 -3 -5 -3 -4 -4 -4 -1 -3 -2 0 0 7 0 0 -1 1 -1 0
H -5 -2 1 -3 -3 -4 -4 -4 -3 -3 -2 -2 -2 0 8 1 -1 -2 0 -1
Q -4 -4 -3 -3 0 -3 -4 -3 -3 -2 -1 -1 -1 0 1 7 2 -1 1 1
E -6 -5 -4 -5 -3 -4 -4 -3 -3 -2 -1 -1 -1 -1 -1 2 6 1 -1 0
D -5 -5 -4 -6 -4 -5 -5 -5 -2 -3 -3 -2 -1 1 -2 -1 1 7 -3 -1
R -5 -4 -3 -4 -2 -3 -4 -3 -3 -3 -2 -2 -1 -1 0 1 -1 -3 6 2
K -4 -4 -3 -5 -2 -3 -4 -3 -2 -2 -1 -1 -1 0 -1 1 0 -1 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.340185, K+ = 0.197246, (K- = 0.140368, C = 0.167198, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 95
# Entropy = 0.9644, Expected = -0.8383
CFYW MLIV G P ATS NH QED RK
CFYW 5 -2 -5 -5 -3 -3 -5 -4
MLIV -2 3 -5 -4 -2 -4 -4 -3
G -5 -5 6 -4 -1 -2 -3 -3
P -5 -4 -4 8 -2 -3 -2 -2
ATS -3 -2 -1 -2 3 -1 -2 -2
NH -3 -4 -2 -3 -1 6 0 -1
QED -5 -4 -3 -2 -2 0 4 -1
RK -4 -3 -3 -2 -2 -1 -1 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.357625, K+ = 0.233909, (K- = 0.163581, C = 0.196653, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 95
# Entropy = 0.9728, Expected = -0.8545
C FY W ML IV G P A T S N H QE D R K
CFYW 5 5 5 -1 -2 -5 -5 -3 -3 -3 -4 -1 -4 -5 -4 -4
MLIV -2 -1 -3 3 3 -5 -4 -2 -1 -3 -4 -4 -3 -5 -3 -3
G -5 -5 -5 -5 -5 6 -4 -1 -3 -1 -1 -3 -3 -2 -4 -3
P -5 -5 -5 -4 -4 -4 8 -1 -2 -2 -3 -3 -2 -3 -3 -2
ATS -2 -3 -4 -3 -2 -1 -2 3 3 3 -1 -2 -1 -2 -2 -1
NH -4 -2 -4 -4 -4 -2 -3 -2 -1 0 6 6 -1 0 -1 -1
QED -5 -4 -5 -4 -4 -3 -2 -2 -2 -1 0 -1 4 4 -1 0
RK -5 -4 -5 -3 -4 -3 -2 -2 -2 -1 -1 -1 0 -2 5 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.350090, K+ = 0.224624, (K- = 0.158275, C = 0.189518, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 95
# Entropy = 0.9763, Expected = -0.8611
C F Y W M L I V G P A T S N H Q E D R K
CFYW 5 5 5 5 -2 -1 -2 -2 -5 -5 -3 -3 -3 -4 -1 -3 -5 -5 -4 -4
MLIV -2 -1 -2 -3 3 3 3 3 -5 -4 -2 -1 -3 -4 -4 -3 -4 -5 -3 -3
G -5 -5 -5 -5 -4 -5 -6 -5 6 -4 -1 -3 -1 -1 -3 -3 -3 -2 -4 -3
P -5 -5 -5 -5 -3 -4 -4 -4 -4 8 -1 -2 -2 -3 -3 -2 -2 -3 -3 -2
ATS -2 -3 -3 -4 -2 -3 -2 -1 -1 -2 3 3 3 -1 -2 -1 -1 -2 -2 -1
NH -4 -3 -1 -4 -3 -4 -4 -4 -2 -3 -2 -1 0 6 6 0 -1 0 -1 -1
QED -5 -5 -4 -5 -3 -4 -5 -4 -3 -2 -2 -2 -1 0 -1 4 4 4 -1 0
RK -5 -4 -3 -5 -2 -3 -4 -3 -3 -2 -2 -2 -1 -1 -1 1 0 -2 5 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.348890, K+ = 0.224194, (K- = 0.158162, C = 0.189262, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 95
# Entropy = 1.2300, Expected = -0.9477
C FY W ML IV G P A T S N H QE D R K
C 9 -3 -4 -3 -2 -5 -5 -1 -2 -2 -4 -5 -5 -5 -5 -5
FY -3 6 1 -1 -2 -5 -5 -3 -3 -3 -4 0 -4 -5 -4 -4
W -4 1 11 -3 -4 -5 -5 -4 -4 -4 -5 -3 -4 -6 -4 -5
ML -3 -1 -3 4 1 -5 -4 -2 -2 -3 -4 -4 -3 -5 -3 -3
IV -2 -2 -4 1 4 -5 -4 -1 -1 -3 -4 -4 -4 -5 -4 -4
G -5 -5 -5 -5 -5 6 -4 -1 -3 -1 -1 -3 -3 -2 -4 -3
P -5 -5 -5 -4 -4 -4 8 -1 -2 -2 -3 -3 -2 -3 -3 -2
A -1 -3 -4 -2 -1 -1 -1 5 0 1 -2 -3 -1 -3 -2 -1
T -2 -3 -4 -2 -1 -3 -2 0 6 1 -1 -2 -2 -2 -2 -1
S -2 -3 -4 -3 -3 -1 -2 1 1 5 0 -2 -1 -1 -2 -1
N -4 -4 -5 -4 -4 -1 -3 -2 -1 0 7 0 -1 1 -1 0
H -5 0 -3 -4 -4 -3 -3 -3 -2 -2 0 9 0 -2 -1 -1
QE -5 -4 -4 -3 -4 -3 -2 -1 -2 -1 -1 0 5 1 0 1
D -5 -5 -6 -5 -5 -2 -3 -3 -2 -1 1 -2 1 7 -3 -2
R -5 -4 -4 -3 -4 -4 -3 -2 -2 -2 -1 -1 0 -3 7 2
K -5 -4 -5 -3 -4 -3 -2 -1 -1 -1 0 -1 1 -2 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.346333, K+ = 0.209932, (K- = 0.148480, C = 0.177436, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 95
# Entropy = 1.2347, Expected = -0.9555
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -4 -4 -3 -3 -2 -2 -5 -5 -1 -2 -2 -4 -5 -4 -6 -5 -5 -5
FY -3 6 6 1 -1 -1 -1 -2 -5 -5 -3 -3 -3 -4 0 -3 -4 -5 -4 -4
W -4 0 2 11 -2 -3 -4 -3 -5 -5 -4 -4 -4 -5 -3 -3 -5 -6 -4 -5
ML -3 0 -2 -3 4 4 1 0 -5 -4 -2 -2 -3 -4 -4 -2 -4 -5 -3 -3
IV -2 -1 -3 -4 1 1 4 4 -5 -4 -1 -1 -3 -4 -4 -4 -4 -5 -4 -4
G -5 -5 -5 -5 -4 -5 -6 -5 6 -4 -1 -3 -1 -1 -3 -3 -3 -2 -4 -3
P -5 -5 -5 -5 -3 -4 -4 -4 -4 8 -1 -2 -2 -3 -3 -2 -2 -3 -3 -2
A -1 -3 -3 -4 -2 -2 -2 -1 -1 -1 5 0 1 -2 -3 -1 -1 -3 -2 -1
T -2 -3 -3 -4 -1 -2 -2 -1 -3 -2 0 6 1 -1 -2 -1 -2 -2 -2 -1
S -2 -3 -3 -4 -3 -3 -3 -3 -1 -2 1 1 5 0 -2 -1 -1 -1 -2 -1
N -4 -4 -3 -5 -3 -5 -4 -4 -1 -3 -2 -1 0 7 0 0 -1 1 -1 0
H -5 -2 1 -3 -3 -4 -4 -4 -3 -3 -3 -2 -2 0 9 1 -1 -2 -1 -1
QE -5 -4 -3 -4 -2 -4 -4 -3 -3 -2 -1 -2 -1 -1 0 5 5 1 0 1
D -5 -5 -5 -6 -5 -5 -5 -5 -2 -3 -3 -2 -1 1 -2 -1 1 7 -3 -2
R -5 -4 -3 -4 -2 -3 -4 -4 -4 -3 -2 -2 -2 -1 -1 0 -1 -3 7 2
K -5 -4 -3 -5 -2 -3 -4 -3 -3 -2 -1 -1 -1 0 -1 1 0 -2 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.347777, K+ = 0.209587, (K- = 0.148022, C = 0.177024, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 95
# Entropy = 1.2926, Expected = -0.9743
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -4 -4 -3 -3 -2 -2 -5 -5 -1 -2 -2 -4 -5 -4 -6 -5 -5 -5
F -3 7 3 0 -1 0 -1 -2 -5 -5 -3 -3 -3 -4 -2 -4 -5 -5 -4 -4
Y -4 3 8 2 -3 -2 -2 -3 -5 -5 -3 -3 -3 -3 1 -3 -4 -5 -3 -3
W -4 0 2 11 -2 -3 -4 -3 -5 -5 -4 -4 -4 -5 -3 -3 -5 -6 -4 -5
M -3 -1 -3 -2 7 2 1 0 -4 -3 -2 -1 -3 -3 -3 -1 -3 -5 -2 -2
L -3 0 -2 -3 2 5 1 0 -5 -4 -2 -2 -3 -5 -4 -3 -4 -5 -3 -3
I -2 -1 -2 -4 1 1 5 3 -6 -4 -2 -2 -3 -4 -4 -4 -4 -5 -4 -4
V -2 -2 -3 -3 0 0 3 5 -5 -4 -1 -1 -3 -4 -4 -3 -3 -5 -4 -3
G -5 -5 -5 -5 -4 -5 -6 -5 6 -4 -1 -3 -1 -1 -3 -3 -3 -2 -4 -3
P -5 -5 -5 -5 -3 -4 -4 -4 -4 8 -1 -2 -2 -3 -3 -2 -2 -3 -3 -2
A -1 -3 -3 -4 -2 -2 -2 -1 -1 -1 5 0 1 -2 -3 -1 -1 -3 -2 -1
T -2 -3 -3 -4 -1 -2 -2 -1 -3 -2 0 6 1 -1 -2 -1 -2 -2 -2 -1
S -2 -3 -3 -4 -3 -3 -3 -3 -1 -2 1 1 5 0 -2 -1 -1 -1 -2 -1
N -4 -4 -3 -5 -3 -5 -4 -4 -1 -3 -2 -1 0 7 0 0 -1 1 -1 0
H -5 -2 1 -3 -3 -4 -4 -4 -3 -3 -3 -2 -2 0 9 1 -1 -2 -1 -1
Q -4 -4 -3 -3 -1 -3 -4 -3 -3 -2 -1 -1 -1 0 1 7 2 -1 0 1
E -6 -5 -4 -5 -3 -4 -4 -3 -3 -2 -1 -2 -1 -1 -1 2 6 1 -1 0
D -5 -5 -5 -6 -5 -5 -5 -5 -2 -3 -3 -2 -1 1 -2 -1 1 7 -3 -2
R -5 -4 -3 -4 -2 -3 -4 -4 -4 -3 -2 -2 -2 -1 -1 0 -1 -3 7 2
K -5 -4 -3 -5 -2 -3 -4 -3 -3 -2 -1 -1 -1 0 -1 1 0 -2 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.344971, K+ = 0.206928, (K- = 0.146555, C = 0.175009, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x8 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 100
# Entropy = 1.0738, Expected = -0.9438
CFYW MLIV G P ATS NH QED RK
CFYW 5 -2 -5 -5 -3 -3 -5 -4
MLIV -2 3 -5 -4 -2 -4 -4 -4
G -5 -5 6 -4 -2 -2 -3 -3
P -5 -4 -4 8 -2 -4 -3 -3
ATS -3 -2 -2 -2 3 -1 -2 -2
NH -3 -4 -2 -4 -1 6 0 -1
QED -5 -4 -3 -3 -2 0 4 -1
RK -4 -4 -3 -3 -2 -1 -1 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.364873, K+ = 0.244712, (K- = 0.169900, C = 0.205037, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 100
# Entropy = 1.0816, Expected = -0.9603
C FY W ML IV G P A T S N H QE D R K
CFYW 5 5 5 -2 -2 -5 -5 -3 -3 -3 -4 -1 -5 -5 -4 -4
MLIV -2 -2 -4 3 3 -5 -4 -2 -2 -3 -4 -4 -4 -5 -4 -4
G -5 -5 -5 -5 -6 6 -4 -1 -3 -1 -2 -4 -4 -3 -4 -3
P -5 -5 -6 -4 -4 -4 8 -1 -3 -2 -4 -3 -3 -3 -3 -2
ATS -2 -3 -4 -3 -2 -2 -2 3 3 3 -1 -2 -2 -2 -2 -2
NH -4 -2 -5 -4 -5 -2 -4 -3 -1 -1 6 6 -1 0 -1 -1
QED -6 -5 -5 -4 -4 -3 -3 -2 -2 -1 0 -1 4 5 -1 0
RK -5 -4 -5 -3 -4 -3 -3 -2 -2 -2 -1 -1 0 -2 5 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.360803, K+ = 0.246685, (K- = 0.171968, C = 0.207085, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 8x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 100
# Entropy = 1.0851, Expected = -0.9675
C F Y W M L I V G P A T S N H Q E D R K
CFYW 5 5 5 5 -2 -2 -2 -2 -5 -5 -3 -3 -3 -4 -1 -4 -5 -5 -4 -4
MLIV -2 -1 -3 -4 3 3 3 3 -5 -4 -2 -2 -3 -4 -4 -3 -4 -5 -4 -4
G -5 -5 -6 -5 -5 -5 -6 -5 6 -4 -1 -3 -1 -2 -4 -3 -4 -3 -4 -3
P -5 -5 -5 -6 -4 -4 -4 -4 -4 8 -1 -3 -2 -4 -3 -2 -3 -3 -3 -2
ATS -2 -3 -3 -4 -2 -3 -3 -1 -2 -2 3 3 3 -1 -2 -1 -2 -2 -2 -2
NH -4 -4 -1 -5 -3 -5 -5 -4 -2 -4 -3 -1 -1 6 6 0 -1 0 -1 -1
QED -6 -5 -4 -5 -3 -5 -5 -4 -3 -3 -2 -2 -1 0 -1 4 4 5 -1 0
RK -5 -4 -3 -5 -2 -4 -4 -4 -3 -3 -2 -2 -2 -1 -1 1 -1 -2 5 5
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.358482, K+ = 0.244432, (K- = 0.170794, C = 0.205418, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x16 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 100
# Entropy = 1.3740, Expected = -1.0637
C FY W ML IV G P A T S N H QE D R K
C 9 -3 -5 -3 -2 -5 -5 -1 -2 -2 -4 -5 -6 -5 -5 -5
FY -3 6 1 -1 -2 -5 -5 -4 -3 -3 -4 -1 -4 -5 -4 -4
W -5 1 11 -3 -4 -5 -6 -4 -5 -4 -6 -3 -4 -7 -4 -5
ML -3 -1 -3 5 1 -5 -4 -3 -2 -4 -4 -4 -4 -5 -3 -3
IV -2 -2 -4 1 4 -6 -4 -2 -1 -3 -5 -5 -4 -5 -4 -4
G -5 -5 -5 -5 -6 6 -4 -1 -3 -1 -2 -4 -4 -3 -4 -3
P -5 -5 -6 -4 -4 -4 8 -1 -3 -2 -4 -3 -3 -3 -3 -2
A -1 -4 -4 -3 -2 -1 -1 5 -1 1 -2 -3 -2 -3 -2 -2
T -2 -3 -5 -2 -1 -3 -3 -1 6 1 -1 -3 -2 -2 -2 -2
S -2 -3 -4 -4 -3 -1 -2 1 1 6 0 -2 -1 -1 -2 -1
N -4 -4 -6 -4 -5 -2 -4 -2 -1 0 7 0 -1 1 -1 -1
H -5 -1 -3 -4 -5 -4 -3 -3 -3 -2 0 9 -1 -2 -1 -2
QE -6 -4 -4 -4 -4 -4 -3 -2 -2 -1 -1 -1 5 0 -1 0
D -5 -5 -7 -5 -5 -3 -3 -3 -2 -1 1 -2 0 7 -3 -2
R -5 -4 -4 -3 -4 -4 -3 -2 -2 -2 -1 -1 -1 -3 7 2
K -5 -4 -5 -3 -4 -3 -2 -2 -2 -1 -1 -2 0 -2 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.350791, K+ = 0.227435, (K- = 0.160144, C = 0.191827, delta = 1) |
# Rectangular BLOSUM Scoring Matrix 16x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 100
# Entropy = 1.3787, Expected = -1.0723
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -4 -5 -3 -3 -2 -2 -5 -5 -1 -2 -2 -4 -5 -5 -6 -5 -5 -5
FY -3 6 6 1 -2 -1 -2 -2 -5 -5 -4 -3 -3 -4 -1 -3 -5 -5 -4 -4
W -5 0 1 11 -3 -4 -4 -4 -5 -6 -4 -5 -4 -6 -3 -3 -5 -7 -4 -5
ML -3 0 -3 -3 4 5 1 0 -5 -4 -3 -2 -4 -4 -4 -3 -5 -5 -3 -3
IV -2 -2 -3 -4 0 1 4 4 -6 -4 -2 -1 -3 -5 -5 -4 -4 -5 -4 -4
G -5 -5 -6 -5 -5 -5 -6 -5 6 -4 -1 -3 -1 -2 -4 -3 -4 -3 -4 -3
P -5 -5 -5 -6 -4 -4 -4 -4 -4 8 -1 -3 -2 -4 -3 -2 -3 -3 -3 -2
A -1 -4 -4 -4 -2 -3 -3 -1 -1 -1 5 -1 1 -2 -3 -1 -2 -3 -2 -2
T -2 -3 -3 -5 -2 -3 -2 -1 -3 -3 -1 6 1 -1 -3 -2 -2 -2 -2 -2
S -2 -3 -3 -4 -3 -4 -4 -3 -1 -2 1 1 6 0 -2 -1 -1 -1 -2 -1
N -4 -5 -3 -6 -4 -5 -5 -4 -2 -4 -2 -1 0 7 0 -1 -1 1 -1 -1
H -5 -2 1 -3 -3 -4 -5 -5 -4 -3 -3 -3 -2 0 9 0 -1 -2 -1 -2
QE -6 -5 -4 -4 -2 -4 -4 -3 -4 -3 -2 -2 -1 -1 -1 5 5 0 -1 0
D -5 -5 -5 -7 -5 -6 -6 -5 -3 -3 -3 -2 -1 1 -2 -2 1 7 -3 -2
R -5 -4 -3 -4 -2 -4 -4 -4 -4 -3 -2 -2 -2 -1 -1 0 -2 -3 7 2
K -5 -4 -4 -5 -2 -4 -4 -4 -3 -2 -2 -2 -1 -1 -2 1 0 -2 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.354486, K+ = 0.229030, (K- = 0.160672, C = 0.192836, delta = 1) |
|
# Rectangular BLOSUM Scoring Matrix 20x20 in 1/2 Bit Units
# Blocks Database = blocks.dat
# Cluster Percentage: >= 100
# Entropy = 1.4516, Expected = -1.0948
C F Y W M L I V G P A T S N H Q E D R K
C 9 -3 -4 -5 -3 -3 -2 -2 -5 -5 -1 -2 -2 -4 -5 -5 -6 -5 -5 -5
F -3 7 3 0 -1 0 -1 -2 -5 -5 -4 -3 -3 -5 -2 -4 -5 -5 -4 -4
Y -4 3 8 1 -3 -3 -3 -3 -6 -5 -4 -3 -3 -3 1 -3 -4 -5 -3 -4
W -5 0 1 11 -3 -4 -4 -4 -5 -6 -4 -5 -4 -6 -3 -3 -5 -7 -4 -5
M -3 -1 -3 -3 8 2 1 0 -5 -4 -2 -2 -3 -4 -3 -1 -4 -5 -2 -2
L -3 0 -3 -4 2 5 1 0 -5 -4 -3 -3 -4 -5 -4 -3 -5 -6 -4 -4
I -2 -1 -3 -4 1 1 5 2 -6 -4 -3 -2 -4 -5 -5 -4 -5 -6 -4 -4
V -2 -2 -3 -4 0 0 2 5 -5 -4 -1 -1 -3 -4 -5 -3 -3 -5 -4 -4
G -5 -5 -6 -5 -5 -5 -6 -5 6 -4 -1 -3 -1 -2 -4 -3 -4 -3 -4 -3
P -5 -5 -5 -6 -4 -4 -4 -4 -4 8 -1 -3 -2 -4 -3 -2 -3 -3 -3 -2
A -1 -4 -4 -4 -2 -3 -3 -1 -1 -1 5 -1 1 -2 -3 -1 -2 -3 -2 -2
T -2 -3 -3 -5 -2 -3 -2 -1 -3 -3 -1 6 1 -1 -3 -2 -2 -2 -2 -2
S -2 -3 -3 -4 -3 -4 -4 -3 -1 -2 1 1 6 0 -2 -1 -1 -1 -2 -1
N -4 -5 -3 -6 -4 -5 -5 -4 -2 -4 -2 -1 0 7 0 -1 -1 1 -1 -1
H -5 -2 1 -3 -3 -4 -5 -5 -4 -3 -3 -3 -2 0 9 0 -1 -2 -1 -2
Q -5 -4 -3 -3 -1 -3 -4 -3 -3 -2 -1 -2 -1 -1 0 7 1 -2 0 1
E -6 -5 -4 -5 -4 -5 -5 -3 -4 -3 -2 -2 -1 -1 -1 1 6 1 -2 0
D -5 -5 -5 -7 -5 -6 -6 -5 -3 -3 -3 -2 -1 1 -2 -2 1 7 -3 -2
R -5 -4 -3 -4 -2 -4 -4 -4 -4 -3 -2 -2 -2 -1 -1 0 -2 -3 7 2
K -5 -4 -4 -5 -2 -4 -4 -4 -3 -2 -2 -2 -1 -1 -2 1 0 -2 2 6
[matrix page] [.iij|.qij|.eij|.sij|.lk|.h] Lambda = 0.358511, K+ = 0.225042, (K- = 0.157240, C = 0.189120, delta = 1) |